GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 16:23:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH001D17, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces.
AC172865.1:67638-67657
AAATTCATTTATTTACCAATAGGTGTTGCA67638TCTGCTTTTGCTTGCTTCTGTCTCCTCTTCCAAAAGCAGAAGAGTATAAC
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:68958065-68958084
TTCATTTATTTACCAATAGGCGCTGCAGCA68958065TCTGCTTTTGCTTGCTTCTGTCTCCTCTTCCAAAAGCAGAAGAGGATAAC
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:26220633-26220652
AAATTCATTTATTTACCAATAGGTGTTGCA26220633TCTGCTTTTGCTTGCTTCTGTCTCCTCTTCCAAAAGCAGAAGAGTATAAC
Brassica napus genome assembly, chromosome: A04.
HG994358.1:20746713-20746732
AAATTCATTTATTTACCAATAGGTGTTGCA20746713TCTGCTTTTGCTTGCTTCTGTCTCCTCTTCCAAAAGCAGAAGAGTATAAC
Brassica napus genome assembly, chromosome: C04.
HG994368.1:62962016-62962035
TTCATTTATTTACCAATAGGCGCTGCAGCA62962016TCTGCTTTTGCTTGCTTCTGTCTCCTCTTCCAAAAGCAGAAGAGGATAAC
Brassica rapa genome, scaffold: A04.
LR031576.1:19333356-19333375
AAATTCATTTATTTACCAATAGGTGTTGCA19333356TCTGCTTTTGCTTGCTTCTGTCTCCTCTTCCAAAAGCAGAAGAGTATAAC
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:62645877-62645896
TTCATTTATTTACCAATAGGCGCTGCAGCA62645877TCTGCTTTTGCTTGCTTCTGTCTCCTCTTCCAAAAGCAGAAGAGGATAAC
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:9606430-9606449
CTCATTTATTTAGCAATAGGTGCGGCAGCA9606430TCTGCTTTTGCTTGCTTCTGTCTCCTCTTCCAAAAGCAGAAGAGGATAAC
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:19752128-19752147
AAATTCATTTATTTACCAATAGGTGTTGCA19752128TCTGCTTTTGCTTGCTTCTGTCTCCTCTTCCAAAAGCAGAAGAGTATAAC
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:9643032-9643051
GTTATTACTCATTTACCAATAGGTGCTGCA9643032TCTGCTTTTGCTTGCTTCTGTCTCCTCCTCCAAAAGCAGAACACGATAAC
Coremacera marginata genome assembly, chromosome: 1.
OU612043.1:197541706-197541725
ATTGAAATCATAACCTTCTTCTGGTAAATG197541706TCTGCTTTTGCTTGCTTCTGCGGCGCTTCAGCTATCTTCTACCAGATATT
Anopheles funestus genome assembly, chromosome: X.
OX030925.1:6281690-6281709
TCGATGCACCGGTGCGCCGATGCGGTTGTT6281690TCTGCTTTTGCTTGCTTCTGTTTATAACAGGGAGTAGTAGTTAGTACTGG
Scrobipalpa costella genome assembly, chromosome: Z.
OX463295.1:34515091-34515110
AATTCTTTTGTCTTCAGCACTTTTTTAATT34515091TCTGCTTTTGCTTGCTTCTGTTCCTCTGGCTTTTCAGGACGGATTATTTC
Sepioteuthis lessoniana genome assembly, chromosome: 28.
OY757931.1:80875603-80875622
GAAAGGTTGTCAAGTGAATTTATTACCTGT80875603TCTGCTTTTGCTTGCTTCTGCATGCATTTTCGATTGATAGATAGATAAGC
Dioctria rufipes genome assembly, chromosome: 4.
OZ002743.1:20199299-20199318
AGCTTCCTGTATTAGTTGATGGCTAAGTGC20199299TCTGCTTTTGCTTGCTTCTGGGATGGGATGTGAAAATTGTTTATGCCCGT
Sequence 95466 from Patent WO2008034648.
FB876193.1:1435-1454
GTTATCGTCTTCTGCTTTTGGAGGAGAAGA1435CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGTGGGAAATCAAGTTCT
Sequence 95488 from Patent WO2008034648.
FB876215.1:1450-1469
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1450CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGAGGGAAACCAAGTTCA
Sequence 95466 from Patent EP2090662.
HB746252.1:1435-1454
GTTATCGTCTTCTGCTTTTGGAGGAGAAGA1435CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGTGGGAAATCAAGTTCT
Sequence 95488 from Patent EP2090662.
HB746274.1:1450-1469
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1450CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGAGGGAAACCAAGTTCA
KR 1020230032497-A/1: METHOD FOR BREEDING SELF-COMPATIBILITY RAPHANUS SATIVUS L. AND METHOD AND COMPOSITION FOR SORTING THEREOF.
PE250899.1:4298-4317
GTTTTCATGTTCTGGTTTCGGAAGAGGAGA4298CAGAAGCAAGCAAAAGCAGATGCAACACCTACTGGTAAATGAGTAACAAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092D10, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC189525.2:5062-5081
GTTATACTCTTCTGCTTTTGGAAGAGGAGA5062CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa BcRK6 gene for receptor kinase 6, complete cds.
AB041622.1:2351-2370
GTTATACTCTTCTGCTTTTGGAAGAGGAGA2351CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa SRK-60, SLG-60 genes for S receptor kinase, S-locus glycoprotein, partial cds.
AB097116.1:24933-24952
GTTATCGTCTTCTGCTTTTGGAGGAGAAGA24933CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATGCGTAATAAC
Brassica oleracea S-15 SRK gene for S-locus receptor kinase, complete cds.
AB180903.1:12825-12844
GTTATCGTGTTCTGCTTTTGGAGGAGAAGA12825CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATGAGTAATAAC
Brassica napus BnSRK-6 mRNA for S receptor kinase, partial cds.
AB270768.1:1429-1448
GTTATCGTGTTCTGCTTTTGGAGGAGAAGA1429CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGTGGGAAATCAAGTTCT
Brassica napus BnSRK-6 gene for S receptor kinase, complete cds.
AB270772.1:4246-4265
GTTATCGTGTTCTGCTTTTGGAGGAGAAGA4246CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATGAGTAATAAC
Brassica napus cultivar SI1300 S-locus receptor kinase (SRK) gene, complete cds.
AY448031.1:1699-1718
GTTATCGTGTTCTGCTTTTGGAAGAGGAGA1699CAGAAGCAAGCAAAAGCAGACCTCCCCGGGCG
Brassica napus cultivar SI271 S-locus receptor kinase (SRK) gene, complete cds.
AY448033.1:1699-1718
GTTATCGTGTTCTGCTTTTGGAAGAGGAGA1699CAGAAGCAAGCAAAAGCAGACCTCCCCGGGCG
Podospora comata strain Wa139- chromosome 1, complete sequence.
CP071493.1:3758977-3758996
CAAAAACCTAAATAAAACAAAAAAAAGCCC3758977CAGAAGCAAGCAAAAGCAGATACAAAAAAAAAACACCATAATTCCAGACA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:68451666-68451685
GTTATCGTCTTCTGCTTTTGGAAGAGGAGA68451666CAGAAGCAAGCAAAAGCAGATGCTGCAGCAACTATTATTGGTAAATAAAT
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:47274378-47274397
GTTATCGTGTTCTGCTTTTGGAGGAGAAGA47274378CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATGAGTAATAAC
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:25870703-25870722
GTTATACTCTTCTGCTTTTGGAAGAGGAGA25870703CAGAAGCAAGCAAAAGCAGATGCAACACCTACTGGTAAATAAATGAATTT
Podospora anserina S mat+ genomic DNA chromosome 1, supercontig 2.
CU633901.1:722016-722035
AGAAACCTAAATAAAACAAAAAAAAAGCCC722016CAGAAGCAAGCAAAAGCAGATACAAAAAAAAACACCATAATTCCAGACAC
Podospora anserina genomic DNA, chromosome 1.
FO904936.1:3838702-3838721
AGAAACCTAAATAAAACAAAAAAAAAGCCC3838702CAGAAGCAAGCAAAAGCAGATACAAAAAAAAACACCATAATTCCAGACAC
Brassica napus genome assembly, chromosome: A04.
HG994358.1:20382723-20382742
GTTATACTCTTCTGCTTTTGGAAGAGGAGA20382723CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica napus genome assembly, chromosome: C06.
HG994370.1:41270393-41270412
GTTATCGTGTTCTGCTTTTGGAGGAGAAGA41270393CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATGAGTAATAAC
Sinapis alba S-locus receptor kinase (SRK-3b) gene, partial cds.
KF355947.1:1112-1131
CTTATCGTGTTCTGCTTTTGGAAGAGGAGA1112CAGAAGCAAGCAAAAGCAGATACAACACCTATTGGTTAAATTAGTAATCA
Raphanus sativus S receptor kinase 1 (SRK) gene, complete cds.
KX961695.1:2614-2633
GTTATCGTGTTCTGCTTTTGGAGGAGGAGA2614CAGAAGCAAGCAAAAGCAGATGCAGCACCTATTGGTAAATGAGTAATAAC
Brassica rapa SUI1-1 gene for SRK like receptor kinase, complete cds.
LC088707.1:1683-1702
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1683CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa SUI1-2 gene for SRK like receptor kinase, complete cds.
LC088708.1:1646-1665
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1646CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa SUI1-3 gene for SRK like receptor kinase, complete cds.
LC088709.1:1620-1639
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1620CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa SUI1-4 gene for SRK like receptor kinase, complete cds.
LC088710.1:1589-1608
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1589CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa SUI1-5 gene for SRK like receptor kinase, complete cds.
LC088711.1:1575-1594
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1575CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa SUI1-6 gene for SRK like receptor kinase, complete cds.
LC088712.1:1643-1662
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1643CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa SUI1-7 gene for SRK like receptor kinase, complete cds.
LC088713.1:1688-1707
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1688CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa SUI1-8 gene for SRK like receptor kinase, complete cds.
LC088714.1:1651-1670
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1651CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa SUI1-9 gene for SRK like receptor kinase, complete cds.
LC088715.1:1662-1681
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1662CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa subsp. pekinensis Chihiri 70 BrSUI1 pseudogene, complete sequence, allele: sui-t10.
LC641784.1:1595-1614
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1595CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa subsp. pekinensis Kasumi hakusai BrSUI1 gene for SRK like receptor kinase, complete cds, allele: SUI1-12.
LC641785.1:1592-1611
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1592CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa subsp. pekinensis Menkoi BrSUI1 gene for SRK like receptor kinase, complete cds, allele: SUI1-11.
LC641786.1:1587-1606
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1587CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa subsp. pekinensis Hakuei hakusai BrSUI1 gene for SRK like receptor kinase, complete cds, allele: SUI1-10.
LC641787.1:1579-1598
GTTATACTCTTCTGCTTTTGGAAGAGGAGA1579CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Podospora comata strain T genome assembly, chromosome: 1.
LR026964.1:3790855-3790874
CAAAAACCTAAATAAAACAAAAAAAAGCCC3790855CAGAAGCAAGCAAAAGCAGATACAAAAAAAAAACACCATAATTCCAGACA
Brassica rapa genome, scaffold: A07.
LR031574.1:22486880-22486899
GTTATCGTCTTCTGCTTTTGGAGGAGAAGA22486880CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATGCGTAATAAC
Brassica rapa genome, scaffold: A04.
LR031576.1:18919257-18919276
GTTATACTCTTCTGCTTTTGGAAGAGGAGA18919257CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:23336350-23336369
GTTATCGTGTTCTGCTTTTGGAGGAGGAGA23336350CAGAAGCAAGCAAAAGCAGATGCAGCACCTATTGGTAAATGAGTAATAAC
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:19341773-19341792
GTTATACTCTTCTGCTTTTGGAAGAGGAGA19341773CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATAAATGAATTT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:22778014-22778033
GTTATCGTCTTCTGCTTTTGGAGGAGAAGA22778014CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGGTAAATGCGTAATAAC
Raphanus sativus S receptor kinase (SRK-26-1) gene, complete cds.
MT241388.1:2208-2227
GTTTTCATGTTCTGGTTTCGGAAGAGGAGA2208CAGAAGCAAGCAAAAGCAGATGCAACACCTACTGGTAAATGAGTAACAAC
Raphanus sativus S receptor kinase (SRK) gene, SRK-26-1 allele, complete cds; and retrotransposon Copia1, complete sequence.
MZ383801.1:4298-4317
GTTTTCATGTTCTGGTTTCGGAAGAGGAGA4298CAGAAGCAAGCAAAAGCAGATGCAACACCTACTGGTAAATGAGTAACAAC
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:44044071-44044090
GTTATCCTCTTCTGCTTTTGGAAGAGGAGA44044071CAGAAGCAAGCAAAAGCAGATGCTGCCGCACCTATTGCTAAATAAATGAG
Brassica oleracea mRNA for SRK15 protein, partial.
Y18260.1:1409-1428
GTTATCGTGTTCTGCTTTTGGAGGAGAAGA1409CAGAAGCAAGCAAAAGCAGATGCAACACCTATTGTGGGAAATCAAGTTCT
Microcystis sp. MC19 chromosome, complete genome.
CP020664.1:920246-920265
CCAGTAAATTGCCCTTTTCTTCTGGGAATT920246CAGAAGCAAGCAAAAGCAGAGAAGGAGTGGTTAAGGGACTGGTATAAAAA
Tridacna crocea genome assembly, chromosome: 15.
OX031070.1:31814621-31814640
CCACAACAGAGTAGCCACAACAGAGTAGAA31814621CAGAAGCAAGCAAAAGCAGACCTCAGCCCTAACCATTTGCTAAATTCTTC
Lumbricus rubellus genome assembly, chromosome: 2.
OX243812.1:5496690-5496709
CAGAGCAAAGAAATCGTGAGTTCCTGTGAG5496690CAGAAGCAAGCAAAAGCAGACATAATAGAACAACATTGAAGCTTTGCATC
Gastrophysa polygoni genome assembly, chromosome: 3.
OY755084.1:34991942-34991961
CTGTTTTATTGAGAATCCATACAGCTGTTT34991942CAGAAGCAAGCAAAAGCAGAATTGATGGTGCTCATATTCAGTGTAAACAC
Watersipora subatra genome assembly, chromosome: 1.
OY755158.1:16250451-16250470
GGCCAAAGCCAGGAGCTATATAAGATGCAG16250451CAGAAGCAAGCAAAAGCAGAGCACCTGAACGTCTTACACTGCCATTTACT
Watersipora subatra genome assembly, chromosome: 9.
OY755166.1:46000873-46000892
AAGCAGGCCAGAAGACTATAAAACAGGCCG46000873CAGAAGCAAGCAAAAGCAGAGCGCCTTGAAGTCTCACAATGTGCAGTCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTGCTTTTGCTTGCTTCTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTGCTTTTGCTTGCTTCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.131 | 0.123 | search_plus_done; http://172.18.8.135:50400/match?q=TCTGCTTTTGCTTGCTTCTG&k=0&no_gap=0&offset=0&limit=50
0.390 | 0.258 | search_minus_done; http://172.18.8.135:50400/match?q=CAGAAGCAAGCAAAAGCAGA&k=0&no_gap=0&offset=0&limit=35
0.424 | 0.035 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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