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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 17:03:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Felis catus Senzu DNA, chromosome: F2, American Shorthair breed.
AP023169.1:55752750-55752769
ATAGGAAACATCAATAGAAATACTTCTACT55752750TCTGTTTTGAATGACACAGGCCACGAGAGTTACACATAGTTGTTTGAGAT
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:46015166-46015185
TCTGTCTGGATCTGGACTCTCTCATCTTTG46015166TCTGTTTTGAATGACACAGGCTTGCTTCAGGAGCTCCTTAATGCAAACTG
Brassica napus genome assembly, chromosome: A01.
HG994355.1:30591182-30591201
TCATTTCAAGTTGTCTGGATCTGGACTCTG30591182TCTGTTTTGAATGACACAGGCTTGCTTCAGGAGCTCCTTAATGCAAACTG
Brassica rapa genome, scaffold: A01.
LR031571.1:36571509-36571528
GTTGTCTGGATCTGGACTCTCTCATCTTTG36571509TCTGTTTTGAATGACACAGGCTTGCTTCAGGAGCTCCTTAATGCAAACTG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:50166812-50166831
GTTGTCTGGATCTGGACTCTCTCATCTTTG50166812TCTGTTTTGAATGACACAGGCTTGCTTCAGGAGCTCCTTAATGCAAACTG
Squalius cephalus genome assembly, chromosome: 17.
OX439263.1:678409-678428
AACACACACGGGCCAAATCCTGACTCACAT678409CCTGTGTCATTCAAAACAGAAAGAAACGAGCGGCCTGAAACTCGTCCTGA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:1912106-1912125
CAGTTTGCATTAAGGAGCTCCTGAAGCAAG1912106CCTGTGTCATTCAAAACAGACAGAGTCCAGATCCAGACAACTTGAAATGA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:1006817-1006836
AAGCTTGCATTAAGGATCTCCTGAAACAAG1006817CCTGTGTCATTCAAAACAGACAAAGATGAGTCCAGACAACAAGTTGAAAA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:37384121-37384140
CAGTTTGCATTAAGGAGCTCCTGAAGCAAG37384121CCTGTGTCATTCAAAACAGACAAAGATGAGAGAGTCCAGATCCAGACAAC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:1006817-1006836
AAGCTTGCATTAAGGATCTCCTGAAACAAG1006817CCTGTGTCATTCAAAACAGACAAAGATGAGTCCAGACAACAAGTTGAAAA
Acleris literana genome assembly, chromosome: 21.
OX335689.1:4336798-4336817
TATCCAGTTGAATGTCTCTTTGATCGATAT4336798CCTGTGTCATTCAAAACAGATAACGTGTTATATCTTATACAGGGTGTTTG
Trididemnum nubilum genome assembly, chromosome: 2.
OZ014470.1:2196095-2196114
GCCTCCTCCCTGGCTACGCCTATGCCTGAC2196095CCTGTGTCATTCAAAACAGAAAAAAAATTTTTGATTGGCTGAAGGTCTAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTGTTTTGAATGACACAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTGTTTTGAATGACACAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=TCTGTTTTGAATGACACAGG&k=0&no_gap=0&offset=0&limit=50
0.153 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=CCTGTGTCATTCAAAACAGA&k=0&no_gap=0&offset=0&limit=45
0.157 | 0.005 | cgi_end;

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