GGGenome | Results

2025-04-16 15:24:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

rayctn0_0028_H01.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO091442.1:355-374

TTGGGGAACTCGGGTTTTTCTTTCTGGTAC355TCTTCGTGCTCCTTCGATTTGTGTGACTCGTGGTACTCTTCACGTTGCTT

Sequence 3 from patent US 6211430.
AR145379.1:2618-2637

AAGCAACATGAAGAGTACCACGAGTCACAC2618AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST024 cotton fiber suppression subtractive hybridization Library Gossypium hirsutum cDNA clone F207F3, mRNA sequence.
DR176750.1:363-382

AAACATCATGAAGAGTACCACGAGTCACAC363AAATCGAAGGAGCACGAAGAGTACCCCAAACATGAGAAGCCTGAAATGCA

EST066 cotton fiber suppression subtractive hybridization Library Gossypium hirsutum cDNA clone F207F3, mRNA sequence.
DR432354.1:363-382

AAACATCATGAAGAGTACCACGAGTCACAC363AAATCGAAGGAGCACGAAGAGTACCCCAAACATGAGAAGCCTGAAATGCA

CM011D08 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR453268.1:338-357

AAGCAACATGAAGAGTACCACGAGTCACAC338AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST439 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 6-f6 5', mRNA sequence.
EE592837.1:301-320

AAGCAACATGAAGAGTACCACGAGTCACAC301AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST447 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 6-g2 5', mRNA sequence.
EE592845.1:334-353

AAGCAACATGAAGAGTACCACGAGTCACAC334AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

115H08 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV487198.1:335-354

AAGCAACATGAAGAGTACCACGAGTCACAC335AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

122B11 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV487517.1:336-355

AAGCAACATGAAGAGTACCACGAGTCACAC336AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST000487 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 02-O08 5', mRNA sequence.
GR707287.1:334-353

AAGCAACATGAAGAGTACCACGAGTCACAC334AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST000684 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 03-J01 5', mRNA sequence.
GR707484.1:77-96

AAGCAACATGAAGAGTACCACGAGTCACAC77AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST001150 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 05-H13 5', mRNA sequence.
GR707950.1:164-183

AAGCAACATGAAGAGTACCACGAGTCACAC164AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST001989 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 08-J11 5', mRNA sequence.
GR708789.1:94-113

AAGCAACATGAAGAGTACCACGAGTCACAC94AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST002318 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 09-K11 5', mRNA sequence.
GR709118.1:145-164

AAGCAACATGAAGAGTACCACGAGTCACAC145AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST002419 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 10-A07 5', mRNA sequence.
GR709219.1:128-147

AAGCAACATGAAGAGTACCACGAGTCACAC128AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST003122 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 12-O12 5', mRNA sequence.
GR709922.1:42-61

AAGCAACATGAAGAGTACCACGAGTCACAC42AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST003149 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 13-005 5', mRNA sequence.
GR709949.1:316-335

AAGCAACATGAAGAGTACCACGAGTCACAC316AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST003969 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 15-P16 5', mRNA sequence.
GR710769.1:329-348

AAGCAACATGAAGAGTACCACGAGTCACAC329AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST004215 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 16-N22 5', mRNA sequence.
GR711015.1:316-335

AAGCAACATGAAGAGTACCACGAGTCACAC316AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST004316 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 17-D03 5', mRNA sequence.
GR711116.1:282-301

AAGCAACATGAAGAGTACCACGAGTCACAC282AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST004526 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 17-P18 5', mRNA sequence.
GR711326.1:259-278

AAGCAACATGAAGAGTACCACGAGTCACAC259AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST004554 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 18-B11 5', mRNA sequence.
GR711354.1:239-258

AAGCAACATGAAGAGTACCACGAGTCACAC239AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST005156 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 19-P03 5', mRNA sequence.
GR711956.1:108-127

AAGCAACATGAAGAGTACCACGAGTCACAC108AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST005252 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 20-E19 5', mRNA sequence.
GR712052.1:333-352

AAGCAACATGAAGAGTACCACGAGTCACAC333AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST005282 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 20-G16 5', mRNA sequence.
GR712082.1:125-144

AAGCAACATGAAGAGTACCACGAGTCACAC125AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST005667 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 21-N13 5', mRNA sequence.
GR712467.1:332-351

AAGCAACATGAAGAGTACCACGAGTCACAC332AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST005729 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 22-B07 5', mRNA sequence.
GR712529.1:328-347

AAGCAACATGAAGAGTACCACGAGTCACAC328AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST005795 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 22-E17 5', mRNA sequence.
GR712595.1:309-328

AAGCAACATGAAGAGTACCACGAGTCACAC309AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST005813 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 22-F14 5', mRNA sequence.
GR712613.1:332-351

AAGCAACATGAAGAGTACCACGAGTCACAC332AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST005938 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 22-P07 5', mRNA sequence.
GR712738.1:329-348

AAGCAACATGAAGAGTACCACGAGTCACAC329AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST006085 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 23-K06 5', mRNA sequence.
GR712885.1:329-348

AAGCAACATGAAGAGTACCACGAGTCACAC329AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST006146 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 23-N07 5', mRNA sequence.
GR712946.1:114-133

AAGCAACATGAAGAGTACCACGAGTCACAC114AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST006268 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 31-D14 5', mRNA sequence.
GR713068.1:72-91

AAGCAACATGAAGAGTACCACGAGTCACAC72AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST006522 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 32-A04 5', mRNA sequence.
GR713322.1:306-325

AAGCAACATGAAGAGTACCACGAGTCACAC306AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST006529 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 32-A11 5', mRNA sequence.
GR713329.1:275-294

AAGCAACATGAAGAGTACCACGAGTCACAC275AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST007113 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 33-O19 5', mRNA sequence.
GR713913.1:45-64

AAGCAACACGAAGAGTACCACGAGTCACAC45AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST007857 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 36-E01 5', mRNA sequence.
GR714657.1:330-349

AAGCAACATGAAGAGTACCACGAGTCACAC330AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST007879 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 36-F06 5', mRNA sequence.
GR714679.1:307-326

AAGCAACATGAAGAGTACCACGAGTCACAC307AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST007906 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 36-H02 5', mRNA sequence.
GR714706.1:479-498

CATAAAAATGAAGAGTACCACGAGTCACAC479AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST007970 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 36-N02 5', mRNA sequence.
GR714770.1:330-349

AAGCAACATGAAGAGTACCACGAGTCACAC330AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST008379 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 38-H22 5', mRNA sequence.
GR715179.1:113-132

AAGCAACATGAAGAGTACCACGAGTCACAC113AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST008506 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 39-B10 5', mRNA sequence.
GR715306.1:330-349

AAGCAACATGAAGAGTACCACGAGTCACAC330AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST008596 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 39-H18 5', mRNA sequence.
GR715396.1:333-352

AAGCAACATGAAGAGTACCACGAGTCACAC333AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST008786 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 40-C04 5', mRNA sequence.
GR715586.1:285-304

AAGCAACATGAAGAGTACCACGAGTCACAC285AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST008963 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 40-N13 5', mRNA sequence.
GR715763.1:238-257

AAGCAACATGAAGAGTACCACGAGTCACAC238AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST009041 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 41-C12 5', mRNA sequence.
GR715841.1:297-316

AAGCAACATGAAGAGTACCACGAGTCACAC297AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST009377 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 42-G03 5', mRNA sequence.
GR716177.1:299-318

AAGCAACATGAAGAGTACCACGAGTCACAC299AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST009747 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 44-C06 5', mRNA sequence.
GR716547.1:330-349

AAGCAACATGAAGAGTACCACGAGTCACAC330AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

EST009754 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 44-C18 5', mRNA sequence.
GR716554.1:274-293

AAGCAACATGAAGAGTACCACGAGTCACAC274AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

2P19-C11-T3 Subtracted cDNA library from Gossypium hirsutum L. variety Bikaneri Narma Gossypium hirsutum cDNA, mRNA sequence.
JG452332.1:29-48

GCCACATGAAGAGTACCACGAGTCACAC29AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

A06-GC4142 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK801676.1:349-368

AAGCAACATGAAGAGTACCACGAGTCACAC349AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

Gossypium raimondii isolate D5-4 chromosome D5_03.
CP032555.1:3435471-3435490

AAGCAACAGGAAGAGTACCACGAGTCACAC3435471AAATCGAAGGAGCACGAAGAGTACCAAAAAGAAAAACCCGAGTTCCCCAA

Gossypium raimondii isolate D5-4 chromosome D5_03.
CP032555.1:3458171-3458190

AAGCAACATGAAGAGTACCACGAGTCACAC3458171AAATCGAAGGAGCACGAAGAGTACCAAAAAGAAAAACCCGAGTTCCCCAA

Gossypium turneri isolate D10-2 chromosome D10_03.
CP032573.1:3388588-3388607

AAGCAACATGAAGAGTACCACGACTCACAC3388588AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

Gossypium barbadense FbLate-2 gene, complete cds.
U34401.1:619-638

AAGCAACATGAAGAGTACCACGAGTCACAC619AAATCGAAGGAGCACGAAGAGTACCAGAAAGAAAAACCCGAGTTCCCCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.179 | 0.170 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTCGTGCTCCTTCGATTT&k=0&no_gap=0&offset=0&limit=50
3.275 | 3.096 | search_minus_done; http://172.18.8.135:50400/match?q=AAATCGAAGGAGCACGAAGA&k=0&no_gap=0&offset=0&limit=49
3.310 | 0.036 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).