GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 20:38:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

b02_14na_1x.s 14na Brassica napus cDNA clone b02_14na_1x 5, mRNA sequence.
GT082941.1:60-79
CGTCAGTATGCACAAGACAAGAATATGCTT60TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
odh38f10.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH921565.1:519-538
GTCAGTATGCACAAGATCAAGAATATGCTT519TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
odj16b01.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH931996.1:116-135
GTCAGTATGCACAAGATCAAGAATATGCTT116TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
odf97a05.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH933738.1:545-564
GTCAGTATGCACAAGATCAAGAATATGCTT545TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
odg51a11.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH943446.1:81-100
CGTCAGTATGCACAAGATCAAGATATGCTT81TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
obu77c02.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH944729.1:79-98
GTCAGTATGCACAAGATCAAGAATATGCTT79TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
odg70c03.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH960215.1:395-414
GTCAGTATGCACAAGATCAAGAATATGCTT395TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
odg49e01.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH981690.1:438-457
GTCAGTATGCACAAGATCAAGAATATGCTT438TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
oeg94f02.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ022295.1:440-459
GTCAGTATGCACAAGATCAAGAATATGCTT440TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
lke09h08.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ043840.1:354-373
GTCAGTATGCACAAGATCAAGAATATGCTT354TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTTTTTCT
llf58g04.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ058854.1:315-334
GTCAGTATGCACAAGATCAAGAATATGCTT315TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
lle54c04.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ081868.1:500-519
GTCAGTATGCACAAGATCAAGAATATGCTT500TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
BOIEA22TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIEA22, genomic survey sequence.
CC964717.1:324-343
GTCAGTATGCACAAGATCAAGAATATGCTT324TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
JBnY040J09R Brassica napus BAC library JBnY Brassica napus genomic clone JBnY040J09, genomic survey sequence.
DU107097.1:781-800
GTCAGTATGCACAAGATCAAGAATATGCTT781TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACTCTATGTTGTTTTC
Brassica oleracea clone BOT01-27O20, WORKING DRAFT SEQUENCE, 3 ordered pieces.
AC240083.1:46050-46069
GTCAGTATGCACAAGATCAAGAATATGCTT46050TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:8725414-8725433
GTCAGTATGCACAAGATCAAGAATATGCTT8725414TCTTCTCATAGGCGTAGATGATCTTCGGAGAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:36758485-36758504
GTCAGTATGCACAAGATCAAGAATATGCTT36758485TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:40669195-40669214
GTCAGTATGCACAAGATCAAGAATATGCTT40669195TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACTCTATGTTGTTTTT
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:47292497-47292516
GTCAGTATGCACAAGATCAAGAATATGCTT47292497TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:54306355-54306374
GTCAGTATGCACAAGATCAAGAATATGCTT54306355TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:3828514-3828533
GTCAGTATGCACAAGATCAAGAATATGATT3828514TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:48852857-48852876
GTCAGTATGCACAAGATCAAGAATATGCTT48852857TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:58959655-58959674
GTCAGTATGCACAAGATCAAGAATATGCTT58959655TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:59191224-59191243
GTCAGTATGCACAAGATCAAGAATATGCTT59191224TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:6534694-6534713
GTCAGTATGCACAAGATCAAGAATATGCTT6534694TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:8852798-8852817
GTCAGTATGCACAAGATCAAGAATATGCTT8852798TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:30709363-30709382
GTCAGTATGCACAAGATCAAGAATATGCTT30709363TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:30771028-30771047
GTCAGTATGCACAAGATCAAGAATATGCTT30771028TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGATCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:53928226-53928245
GTCAGTATGCACAAGATCAAGAATATGCTT53928226TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACTCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:56275125-56275144
GTCAGTATGCACAAGATCAAGAATATGCTT56275125TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:43704963-43704982
GTCAGTATGCACAAGATCAAGAATATGCTT43704963TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:51107795-51107814
GTCAGTATGCACAAGATCAAGAATATGCTT51107795TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:53669593-53669612
GTCAGTATGCACAAGATCAAGAATATGCTT53669593TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:6426658-6426677
GTCAGTATGCACAAGATCAAGAATATGCTT6426658TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:30276616-30276635
GTCAGTATGCACAAGATCAAGAATATGCTT30276616TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:6521075-6521094
GTCAGTATGCACAAGATCAAGAATATGCTT6521075TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:57430591-57430610
ATCAGTATGCACAAGATCAAGAATATGCTT57430591TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:47588084-47588103
GTCAGTATGCACAAGATCAAGAATATGCTT47588084TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:49556047-49556066
GTCAGTATGCACAAGATCAAGAATATGCTT49556047TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:54259325-54259344
GTCAGTATGCACAAGATCAAGAATATGATT54259325TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:67146464-67146483
GTCAGTATGCACAAGATCAAGAATATGCTT67146464TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:78147132-78147151
GTCAGTATGCACAAGATCAAGAATATGCTT78147132TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:22209778-22209797
GTCAGTATGCACAAGATCAAGAATATGCTT22209778TCTTCTCATAGGCGTAGATGATATTCGGAAAGCGACCCTATGTTATTTTC
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:57497084-57497103
GTCAGTATGCACAAGATCAAGAATATGCTT57497084TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:59576285-59576304
GTCAGTATGCACAAGATCAAGAATATGCTT59576285TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:61103205-61103224
GTCAGTATGCACAAGATCAAGAATATGCTT61103205TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica oleracea clone BAC B77C13, complete sequence.
EU579455.1:64417-64436
GTCAGTATGCACAAGATCAAGAATATGCTT64417TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C01.
HG994365.1:6848021-6848040
GTCAGTATGCACAAGATCAAGAATATGCTT6848021TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGTCCCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C01.
HG994365.1:7339511-7339530
GTCAGTATGCACAAGATCAAGAATATGCTT7339511TCTTCTCATAGGCGTAGATGATCTTGACGACCCTATGTTGTTTTCCGCTA
Brassica napus genome assembly, chromosome: C01.
HG994365.1:19057043-19057062
GTCAGTATGCACAAGATCAAGAATATGCTT19057043TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C01.
HG994365.1:44250854-44250873
GTCAGTATGCACAAGATCAAGAATATGCTT44250854TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACTCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C01.
HG994365.1:46900188-46900207
GTCAGTATGCACAAGATCAAGAATATGCTT46900188TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCAACCCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C02.
HG994366.1:6590168-6590187
ATCAGTATGCACAAGATCAAGAATATGCTT6590168TCTTCTCATAGGCGTAGATGATCTTCGGAAAGTGACCCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:18478451-18478470
GTCAGTATGCACAAGATCAAGAATAAGCTT18478451TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:23959559-23959578
GTCAGTATGCACAAGATCAAGAATATGCTT23959559TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACTCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:24975174-24975193
TCAAGTATGCACAAGATCAAGAATATGCTT24975174TCTTCTCATAGGCGTAGATGATCTTGAGAAAGCGACCCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:35967871-35967890
GTCAGTATGCACAAGATCGAGAATATGCTT35967871TCTTCTCATAGGCGTAGATGATCTTCGAAAAGCGACTCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:43054949-43054968
TCAAGTATGCACAAGATCAAGAATATGCTT43054949TCTTCTCATAGGCGTAGATGATCTTGGAAAGCGACCCTATGTTGTTTTCC
Brassica napus genome assembly, chromosome: C04.
HG994368.1:4829390-4829409
ATCAGTATGCACAAGATCAAGAATATGCTT4829390TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C04.
HG994368.1:8544242-8544261
GTCAGTATGCACAAGATCAAGAATATGCTT8544242TCTTCTCATAGGCGTAGATGATCTTCGGAGAGCGACCCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C04.
HG994368.1:35378053-35378072
GTCAGTATGCACAAGATCAAGAATATGCTT35378053TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACTCTATGTTGTTTTT
Brassica napus genome assembly, chromosome: C04.
HG994368.1:41003792-41003811
GTCAGTATGCACAAGATCAAGAATATGCTT41003792TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C05.
HG994369.1:5627926-5627945
GTCAGTATGCACAAGATCAAGAATATGCTT5627926TCTTCTCATAGGCGTAGATGATCTTGGAAAGCGACCCCCTATGTTGTTTT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:8357770-8357789
GCCAGTATGCACAAGATCAAGAATATGCTT8357770TCTTCTCATAGGCGTAGATGATTTTCGAAAAGCGACCCTATGTTGTTTTC
Brassica napus genome assembly, chromosome: C06.
HG994370.1:37671910-37671929
GTCAGTATGCACAAGATCAAGAATATGCTT37671910TCTTCTCATAGGCGTAGATGATCTTCGGAAAGCGACCCTATGTTGTTTTC
Urbifossiella limnaea strain ETA_A1 chromosome, complete genome.
CP036273.1:4645570-4645589
GGTTGGACTCGGTCACAAGCAGCCCGCCGC4645570TCTTCTCATAGGCGTAGATGATCGCCGGGTCGATCCCCGCGGCCGTCATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTTCTCATAGGCGTAGATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTCTCATAGGCGTAGATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.318 | 0.309 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTCTCATAGGCGTAGATG&k=0&no_gap=0&offset=0&limit=50
0.374 | 0.056 | search_minus_done; http://172.18.8.135:50400/match?q=CATCTACGCCTATGAGAAGA&k=0&no_gap=0&offset=0&limit=0
0.374 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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