GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:35:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

DP-KSU4_10F_78 EST-DP-sukary library Phoenix dactylifera cDNA clone DP-KSU4_10F_78, mRNA sequence.
JZ766056.1:681-704
ACACCATCAGGGACGAAAAGATTGCATCCA681AGCTTCCTGCTGCCGATAAGAAGAAGATTGAGGATGCCGTCGAGCAAGCAATTC
Elaeis guineensis EST, clone (6lib)_isotig00927.
LM615788.1:1822-1845
ACACCATCAGGGATGATAAGATTGCATCCA1822AGCTTCCTGCTGCCGATAAGAAGAAGATTGAGGATGCCGTTGAGGAAGCAATTC
TSA: Elaeis guineensis isotig09592.Elguifruit mRNA sequence.
JO096819.1:1658-1681
ACACCATCAGGGATGATAAGATTGCATCCA1658AGCTTCCTGCTGCCGATAAGAAGAAGATTGAGGATGCCGTTGAGGAAGCAATTC
TSA: Rhynchophorus ferrugineus contig26452.Rhfeelpa mRNA sequence.
JR493915.1:346-369
ACACCATCAGGGACGAAAAGATTGCATCCA346AGCTTCCTGCTGCCGATAAGAAGAAGATTGAGGATGCCGTCGAGCAAGCAATTC
Elaeis guineensis clone estEgSNP7 DnaK-type molecular chaperone hsp70 (Hsp70) mRNA, partial cds.
JX438709.1:178-201
ACACCATCAGGGATGATAAGATTGCATCCA178AGCTTCCTGCTGCCGATAAGAAGAAGATTGAGGATGCCGTTGAGGAAGCAATTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TCTTCTTATCGGCAGCAGGAAGCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TCTTCTTATCGGCAGCAGGAAGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=TCTTCTTATCGGCAGCAGGAAGCT&k=0&no_gap=0&offset=0&limit=50
0.293 | 0.200 | search_minus_done; http://172.18.8.135:50400/match?q=AGCTTCCTGCTGCCGATAAGAAGA&k=0&no_gap=0&offset=0&limit=50
0.297 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).