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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 02:29:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:37574514-37574533
AGAGAGAGAGAGCCTTCGATTTGAATGAAA37574514TGAAAGAAAAGGGGATCTGATGGAAAGTAGAAATGGAGTTAGCGAGAGAG
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:58128294-58128313
AGAGAGAGAGAGAATTCGATTTGAATGAAA58128294TGAAAGAAAAGGGGATCTGATGGAAAGTAGAAATGGAGTTAGCGAGAGAG
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:67283143-67283162
AGAGAGAGAGAGCCTTCGATTTGAATGAAA67283143TGAAAGAAAAGGGGATCTGACGGAAAGTAGAAATGGAGTTAGCGAGAGAG
Peptoclostridium acidaminophilum DSM 3953 plasmid EAL2_808p, complete sequence.
CP007453.1:509447-509466
GATGGAAGTGAAGCTCGACCACCTGATATT509447TGAAAGAAAAGGGGATCTGATGGATCCGGAAATAGTTCAGCTTAGCGGGG
Sarcophaga variegata genome assembly, chromosome: 5.
OW026362.1:28086648-28086667
CTTGTTACAAGTAAACCAACAACATCAGTA28086648TGAAAGAAAAGGGGATCTGAACAAAAATGCGCAAACGACAATGAAGTCGC
Terebella lapidaria genome assembly, chromosome: 10.
OX424564.1:19660892-19660911
GATCTTTACATACCATTGATCATCTCAATA19660892TGAAAGAAAAGGGGATCTGAATCTTCGTGGGAGTGCCAATACTTCCATAA
Rhinatrema bivittatum genome assembly, chromosome: 16.
LR584402.1:29194976-29194995
CCAGACGGAGCAGGGCTGCCTCGTTGGAAG29194976TCAGATCCCCTTTTCTTTCAGATACAAATACAGTACCAAGGAAGCCTCCC
BNLGHi6960 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence.
AW186907.1:241-260
CTCTCTCGCTAACTCCATTTCTACTTTCCA241TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAATTCTCTCTCTCTCT
GR__Eb0046G06.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0046G06 3', mRNA sequence.
CO110761.1:8-27
CTTTCCA8TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAAGGCTCTCTCTCTCT
EST1058467 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT547827.1:72-91
ATACCTCGCTAACTCCATTTCTACTTTCCA72TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAAGGCTCTCTCTCTCT
EST1080504 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT569864.1:215-234
CTCTCTCGCTAACTCCATTTCTACTTTCCA215TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAATTCTCTCTCTCTCT
UFL_033_92 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES837597.1:144-163
CTCTCTCGCTAACTCCATTTCTACTTTCCA144TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAATTCTCTCTCTCTCT
Gossypium hirsutum clone JESPR240 microsatellite sequence.
AF351478.1:133-152
ATACCTCGCTAACTCCATTTCTACTTTCCA133TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAAGGCTCTCTCTCTCT
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:22634887-22634906
CTCTCTCGCTAACTCCATTTCTACTTTCCA22634887TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAAGGCTCTCTCTCTCT
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:67663643-67663662
CTCTCTCGCTAACTCCATTTCTACTTTCCA67663643TCAGATCCCCTTTTCTTTCATTTCATTCAAATCGAATTCTCTCTCTCTCT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 7.
CP124725.1:45371340-45371359
CACTGATCAAATATGATTCAATGGTTCAAA45371340TCAGATCCCCTTTTCTTTCATTTTTTAAATGAAACCAACCCCCAAAATCC
Rosa rugosa genome assembly, chromosome: 1.
OY288191.1:55783901-55783920
GGTCAGATCCCCTTTTCAAGAATGTGTGGG55783901TCAGATCCCCTTTTCTTTCATTCTTGGGGATTTTCATTCCTAGAGAGGAG
Ligustrum vulgare genome assembly, chromosome: 5.
OY743172.1:24531792-24531811
TGTAAGATGCATGTCTTGTGAGTTTAGAAC24531792TCAGATCCCCTTTTCTTTCATCAAGTTACTGGGTTACATTAACGTGGCCA
Leucoma salicis genome assembly, chromosome: Z.
OX411803.1:16213003-16213022
CACGATAATTTTAATTACATTATTTAATGT16213003TCAGATCCCCTTTTCTTTCACTTTACACATTTTTTTCTATTTCTAATGAT
Sepioteuthis lessoniana genome assembly, chromosome: 8.
OY757911.1:82306935-82306954
TTATTAAATAACTAGAACTAACTCCACTTT82306935TCAGATCCCCTTTTCTTTCATTTTTTTCAGCTCGACGTTGCATGTGCTAT

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