GGGenome | Results

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2025-03-16 18:33:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Erinaceus europaeus genome assembly, chromosome: 7.
OX485816.1:68624862-68624881

GTGGGAAGATGTAGGACTCTCTGTGGAGGA68624862TGAAAGGCTTAAATGGCTGCGAACCTTGTGAGATTTATGCGTCCTCCTGT

Phalacrocorax aristotelis genome assembly, chromosome: 8.
OX451230.1:16626041-16626060

AGTACTTTTGACAATTAAATAGAAATAGAA16626041TGAAAGGCTTAAATGGCTGCAGGGGATAAACACATATAAATAGGATAAGG

Sequence 1542 from patent US 9777287.
MI100087.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Sequence 1542 from patent US 9879275.
MI414044.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Sequence 1542 from patent US 10138492.
MM423467.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Sequence 1542 from patent US 10428344.
MO393982.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Sequence 1542 from patent US 10815494.
MV829324.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Sequence 1542 from patent US 11001854.
MX735872.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Sequence 1542 from patent US 11008584.
MX882419.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Sequence 1542 from patent US 11377666.
OO329825.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Sequence 1542 from patent US 11396659.
OO399085.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Sequence 1542 from patent US 11613763.
OS456315.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Sequence 1542 from patent US 11624075.
OS890094.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Sequence 1542 from patent US 11773404.
OT599619.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Sequence 1542 from patent US 11773405.
OT600631.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Sequence 1542 from patent US 11781150.
OT614696.1:280-299

GTCCTTGAGCTCCATGGATGTGTCTGTACT280TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Syntrophales bacterium isolate 245eff7d-e5b7-4493-ab22-9b904db7233a genome assembly, chromosome: 2.
OY762458.1:482070-482089

TACAAATGCTATGGCATGATTGCCGGTGTG482070TGAAAGGCTTAAATGGCTGCGTTTTATGCCAGCCTTATTCATTAATTCTA

Brassica oleracea var. viridis mRNA, clone: KALE-053O01, 5' end sequence.
DK476136.1:512-531

GTCCTTAAGCTCCATGGACATGAATGTGCT512TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAAGTTGTGTCTCGGA

Brassica oleracea var. viridis mRNA, clone: KALE-071O09, 5' end sequence.
DK483037.1:293-312

GTCCTTGAGCTCCATGGATGTGTCTGTACT293TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica oleracea var. viridis mRNA, clone: KALE-113I17, 5' end sequence.
DK498975.1:293-312

GTCCTTGAGCTCCATGGATGTGTCTGTACT293TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica oleracea var. viridis mRNA, clone: KALE-119A05, 5' end sequence.
DK501061.1:323-342

GTCCTTAAGCTCCATGGACATGAATGTACT323TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAAGTTGTGTCTCGGA

Brassica oleracea var. viridis mRNA, clone: KALE-154B06, 5' end sequence.
DK514461.1:296-315

GTCCTTGAGCTCCATGGATGTGTCTGTACT296TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

0187583 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV091274.1:362-381

GTCCTTGAGCTCCATGGATGTGTCTGTACT362TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

BR055936 seedling cDNA library KBPS Brassica rapa subsp. pekinensis cDNA clone KBPS-046G05 5', mRNA sequence.
EX071291.1:289-308

GTCCTTTAGCTACGCGGACATGTCTGTACC289TGAAAGGCTTAAATGGCTGCAACAGCATCAACAACAAGAAGTTTTGTCTC

RS1CM40TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX889901.1:298-317

GTCCTTGAGCTCCATGGATGTGTCTGTACT298TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAACAACAACAAC

RR2EP88TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD540809.1:214-233

GTCCTTGAGCTCCATGGATGTGTCTGTACT214TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAACAAGTTCTGA

RR2FW40TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD969862.1:179-198

GTCCTTGAGCTCCATGGATGTGTCTGTACT179TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAACAAGTTCTGA

Raphanus sativus mRNA, clone: RSCL03L08, 5' end sequence.
FY434088.1:253-272

GTCCTTGAGCTCCATGGATGTGTCTGTACT253TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAACAACAACAAC

Raphanus sativus mRNA, clone: RSCL04M20, 5' end sequence.
FY434459.1:135-154

GTCCTTGAGCTCCATGGATGTGTCTGTACT135TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAACAACAACAAC

Raphanus sativus mRNA, clone: RSCL09L21, 5' end sequence.
FY436103.1:251-270

GTCCTTGAGCTCCATGGATGTGTCTGTACT251TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAACAACAACAAC

Raphanus sativus mRNA, clone: RSCS05F05, 5' end sequence.
FY447673.1:142-161

GTCCTTGAGCTCCATGGATGTGTCTGTACT142TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAACAACAACAAC

h10_03na_1a.s 03na Brassica napus cDNA clone h10_03na_1a 5, mRNA sequence.
GT075192.1:151-170

GTCCTTGAGCTCCATGGATGTGTCTGTACT151TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

TSA: Raphanus sativus var. sativus RNA, contig: WG3_2307.
FX664386.1:390-409

GTCCTTGAGCTCCATGGATGTGTCTGTACT390TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAACAACAACAAC

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_16816.
FX701884.1:342-361

GTCCTTGAGCTCCATGGATGTGTCTGTACT342TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_15060.
FX706627.1:296-315

GTCCTTAAGCTCCATGGACATGAGTGTACT296TGAAAGGCTTAAATGGCTGCGACAGCAACAACAAAAACAAGTTGTGTCTC

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_16650.
FX738256.1:287-306

GTCCTTGAGCTCCATGGATGTGTCTGTACT287TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_17949.
FX744859.1:298-317

GTCCTTAAGCTCCATGGACATGAGTGTACT298TGAAAGGCTTAAATGGCTGCGACAGCAACAACAAAAACAAGTTGTGTCTC

TSA: Raphanus sativus RS00549 mRNA sequence.
JT785096.1:236-255

GTCCTTGAGCTCCATGGATGTGTCTGTACT236TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAACAACAACAAC

TSA: Raphanus sativus RS00551 mRNA sequence.
JT785098.1:236-255

GTCCTTGAGCTCCATGGATGTGTCTGTACT236TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAACAACAACAAC

TSA: Raphanus sativus RS00556 mRNA sequence.
JT785103.1:236-255

GTCCTTGAGCTCCATGGATGTGTCTGTACT236TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAACAACAACAAC

CAP028O16.R CAP Capsella rubella genomic 3', genomic survey sequence.
KG055127.1:641-660

CTGTCAAGAAAGCTTGGATATGTCTGTACT641TGAAAGGCTTAAATGGCTGCAACAGCAACAACATCAACTACAACATGTTG

Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:7215953-7215972

GTCCTTAAGCTACGCGGACATGTCTGTACC7215953TGAAAGGCTTAAATGGCTGCAACAGCATGAACAACAAGAAGTTTTGTCTC

Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:51524518-51524537

GTCCTTAAGCTCCATGGACATGAATGTACT51524518TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAAGTTGTGTCTC

Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:41389385-41389404

GTCCTTAAGCTCCATGGACATGAATGTACT41389385TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAAGTTGTGTCTCGGA

Brassica napus genome assembly, chromosome: A06.
HG994360.1:36567576-36567595

GTCCTTAAGCTCCATGGACATGAATGTACT36567576TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAAGTTGTGTCTC

Brassica napus genome assembly, chromosome: A07.
HG994361.1:1842075-1842094

GTCCTTGAGCTCCATGGATGTGTCTGTACT1842075TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica napus genome assembly, chromosome: C07.
HG994371.1:5717285-5717304

GTCCTTGAGCTCCATGGATGTGTCTGTACT5717285TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica rapa genome, scaffold: A09.
LR031568.1:6777888-6777907

GTCCTTTAGCTACGCGGACATGTCTGTACC6777888TGAAAGGCTTAAATGGCTGCAACAGCATCAACAACAAGAAGTTTTGTCTC

Brassica rapa genome, scaffold: A06.
LR031569.1:46636523-46636542

GTCCTTAAGCTCCATGGACATGAATGTACT46636523TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAAGTTGTGTCTC

Brassica rapa genome, scaffold: A07.
LR031574.1:1810760-1810779

GTCCTTGAGCTCCATGGATGTGTCTGTACT1810760TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:7007967-7007986

GTCCTTGAGCTCCATGGATGTGTCTGTACT7007967TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica rapa BrabHLH144 gene for Unknown.
LR756681.1:63-82

GTCCTTAAGCTCCATGGACATGAGTGTACT63TGAAAGGCTTAAATGGCTGCGACAGCAACAACAAAAACAAGTTGTGTCTC

Brassica rapa BrabHLH207 gene for Unknown.
LR756744.1:63-82

GTCCTTTAGCTACGCGGACATGTCTGTACC63TGAAAGGCTTAAATGGCTGCAACAGCATCAACAACAAGAAGTTTTGTCTC

Brassica rapa BrabHLH220 gene for Unknown.
LR756757.1:63-82

GTCCTTGAGCTCCATGGATGTGTCTGTACT63TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica oleracea BolbHLH073 gene for Unknown.
LR756861.1:63-82

GTCCTTAAGCTCCATGGACATGAATGTACT63TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAAGTTGTGTCTCGGA

Brassica oleracea BolbHLH238 gene for Unknown.
LR757026.1:63-82

GTCCTTGAGCTCCATGGATGTGTCTGTACT63TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica napus BnabHLH031 gene for Unknown.
LR757087.1:63-82

GTCCTTAAGCTCCATGGACATGAATGTACT63TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAAGTTGTGTCTCGGA

Brassica napus BnabHLH073 gene for Unknown.
LR757129.1:63-82

GTCCTTGAGCTCCATGGATGTGTCTGTACT63TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica napus BnabHLH104 gene for Unknown.
LR757160.1:63-82

GTCCTTAAGCTCCATGGACATGAATGTACT63TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAAGTTGTGTCTC

Brassica napus BnabHLH212 gene for Unknown.
LR757268.1:63-82

GTCCTTGAGCTCCATGGATGTGTCTGTACT63TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica rapa BrabHLH144 gene for Unknown.
LR757640.1:63-82

GTCCTTAAGCTCCATGGACATGAGTGTACT63TGAAAGGCTTAAATGGCTGCGACAGCAACAACAAAAACAAGTTGTGTCTC

Brassica rapa BrabHLH207 gene for Unknown.
LR757703.1:63-82

GTCCTTTAGCTACGCGGACATGTCTGTACC63TGAAAGGCTTAAATGGCTGCAACAGCATCAACAACAAGAAGTTTTGTCTC

Brassica rapa BrabHLH220 gene for Unknown.
LR757716.1:63-82

GTCCTTGAGCTCCATGGATGTGTCTGTACT63TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica oleracea BolbHLH073 gene for Unknown.
LR758084.1:63-82

GTCCTTAAGCTCCATGGACATGAATGTACT63TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAAGTTGTGTCTCGGA

Brassica oleracea BolbHLH238 gene for Unknown.
LR758249.1:63-82

GTCCTTGAGCTCCATGGATGTGTCTGTACT63TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica napus BnabHLH031 gene for Unknown.
LR758310.1:63-82

GTCCTTAAGCTCCATGGACATGAATGTACT63TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAAGTTGTGTCTCGGA

Brassica napus BnabHLH073 gene for Unknown.
LR758352.1:63-82

GTCCTTGAGCTCCATGGATGTGTCTGTACT63TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica napus BnabHLH104 gene for Unknown.
LR758383.1:63-82

GTCCTTAAGCTCCATGGACATGAATGTACT63TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAAGTTGTGTCTC

Brassica napus BnabHLH212 gene for Unknown.
LR758491.1:63-82

GTCCTTGAGCTCCATGGATGTGTCTGTACT63TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica rapa BrabHLH144 gene for Unknown.
LR758863.1:63-82

GTCCTTAAGCTCCATGGACATGAGTGTACT63TGAAAGGCTTAAATGGCTGCGACAGCAACAACAAAAACAAGTTGTGTCTC

Brassica rapa BrabHLH207 gene for Unknown.
LR758926.1:63-82

GTCCTTTAGCTACGCGGACATGTCTGTACC63TGAAAGGCTTAAATGGCTGCAACAGCATCAACAACAAGAAGTTTTGTCTC

Brassica rapa BrabHLH220 gene for Unknown.
LR758939.1:63-82

GTCCTTGAGCTCCATGGATGTGTCTGTACT63TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica oleracea BolbHLH073 gene for Unknown.
LR759043.1:63-82

GTCCTTAAGCTCCATGGACATGAATGTACT63TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAAGTTGTGTCTCGGA

Brassica oleracea BolbHLH238 gene for Unknown.
LR759208.1:63-82

GTCCTTGAGCTCCATGGATGTGTCTGTACT63TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica napus BnabHLH031 gene for Unknown.
LR759269.1:63-82

GTCCTTAAGCTCCATGGACATGAATGTACT63TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAAGTTGTGTCTCGGA

Brassica napus BnabHLH073 gene for Unknown.
LR759311.1:63-82

GTCCTTGAGCTCCATGGATGTGTCTGTACT63TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica napus BnabHLH104 gene for Unknown.
LR759342.1:63-82

GTCCTTAAGCTCCATGGACATGAATGTACT63TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAAGTTGTGTCTC

Brassica napus BnabHLH212 gene for Unknown.
LR759450.1:63-82

GTCCTTGAGCTCCATGGATGTGTCTGTACT63TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica rapa BrabHLH144 gene for Unknown.
LR759822.1:63-82

GTCCTTAAGCTCCATGGACATGAGTGTACT63TGAAAGGCTTAAATGGCTGCGACAGCAACAACAAAAACAAGTTGTGTCTC

Brassica rapa BrabHLH207 gene for Unknown.
LR759885.1:63-82

GTCCTTTAGCTACGCGGACATGTCTGTACC63TGAAAGGCTTAAATGGCTGCAACAGCATCAACAACAAGAAGTTTTGTCTC

Brassica rapa BrabHLH220 gene for Unknown.
LR759898.1:63-82

GTCCTTGAGCTCCATGGATGTGTCTGTACT63TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:22936385-22936404

GTCCTTGAGCTCCATGGATGTGTCTGTACT22936385TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAACAACAAGTTC

Brassica rapa genome assembly, chromosome: A06.
LS974622.2:50252534-50252553

GTCCTTAAGCTCCATGGACATGAATGTACT50252534TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAAGTTGTGTCTC

Brassica rapa genome assembly, chromosome: A07.
LS974623.2:1821665-1821684

GTCCTTGAGCTCCATGGATGTGTCTGTACT1821665TGAAAGGCTTAAATGGCTGCAACAACAACAACAACAAGTTCTGAGCACTA

Brassica rapa genome assembly, chromosome: A09.
LS974625.2:7092453-7092472

GTCCTTTAGCTACGCGGACATGTCTGTACC7092453TGAAAGGCTTAAATGGCTGCAACAGCATCAACAACAAGAAGTTTTGTCTC

Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:22936385-22936404

GTCCTTGAGCTCCATGGATGTGTCTGTACT22936385TGAAAGGCTTAAATGGCTGCAACAGCAACAACAACAACAACAACAAGTTC

Macropis europaea genome assembly, chromosome: 11.
OU744353.1:10766678-10766697

GCTCCCTTTGATAGCTCTCATTCTAGACAG10766678TGAAAGGCTTAAATGGCTGCTTGGTGTCCGTTTACGCGGGTCAAGATCAA

Chrysotoxum festivum genome assembly, chromosome: 2.
OZ007555.1:136404710-136404729

AAATAAGTCATTTATAAATTAAATAAAAAG136404710TGAAAGGCTTAAATGGCTGCTCTGTGGTTATGCAGTGTTAAATGTTAAGA

Data Export:

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Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAAAGGCTTAAATGGCTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAAAGGCTTAAATGGCTGC | format : html | download : | debug :

0.009 | 0.009 | search_start;
2.222 | 2.213 | search_plus_done; http://172.18.8.135:50400/match?q=TGAAAGGCTTAAATGGCTGC&k=0&no_gap=0&offset=0&limit=50
2.341 | 0.119 | search_minus_done; http://172.18.8.135:50400/match?q=GCAGCCATTTAAGCCTTTCA&k=0&no_gap=0&offset=0&limit=0
2.341 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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