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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 11:37:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

SS1495.txt NaCl treated Chinese cabbage seedling library Brassica rapa subsp. pekinensis cDNA clone SS1495.txt 5', mRNA sequence.
CV545530.1:106-125
GGCCGTCGCTATGCCTTTCATGCCGTTCCC106TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
Brassica rapa subsp. pekinensis mRNA, clone: BRest06-P17, 5'-end sequence.
DC845550.1:46-65
GGCCGTCGCTATGCCTTTCATGCCGTTCCC46TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
BR002028 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-003E01 5', mRNA sequence.
EX017384.1:44-63
GGCCGTCGCTATGCCTTTCATGCCGTTCCC44TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
BR007382 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-081E12 5', mRNA sequence.
EX022738.1:386-405
GGCCGTCGCTATGCCTTTCATGCCGTTCCC386TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
BR041217 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-019E09 5', mRNA sequence.
EX056573.1:380-399
GGCCGTCGCTATGCCTTTCATGCCGTTCCC380TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAA
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF03L22, 5'-end sequence.
FY064691.1:476-495
GGCCGTCGCTATGCCTTTCATGCCGTTCCC476TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF05N18, 5'-end sequence.
FY065443.1:241-260
GGCCGTCGCTATGCCTTTCATGCCGTTCCC241TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1938.
FX698438.1:469-488
GGCCGTCGCTATGCCTTTCATGCCGTTCCC469TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
Melanchra persicariae genome assembly, chromosome: 11.
OX376654.1:4185399-4185418
GGAACCGGATCAGGTTTTAGAATCATTTGA4185399TGAACAGCAGATGGAGTTGGAAAGTTCGTATAGTGATGATGATGAAGATG
Melanchra persicariae genome assembly, chromosome: 30.
OX376673.1:6128697-6128716
GGAACCGGATCAGGTTTTAGAATCGTTTGA6128697TGAACAGCAGATGGAGTTGGAAAGTTCGTATAGTGATGATGATGAAGAGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_11357.
FX731922.1:1393-1412
TGCAGTAGCCTTTACCCAACATGATCCCTG1393CCAACTCCATCTGCTGTTCAGGGAACGGCATGAAAGGCATAGCGACGGCC
KBrS001P16R KBrS, Brassica rapa Sau3AI BAC library Brassica rapa subsp. pekinensis genomic clone KBrS001P16, genomic survey sequence.
DU827629.1:845-864
TGCAGTAGCCTTTACCCAACATGATCCCTG845CCAACTCCATCTGCTGTTCAGGGAACGGCATGA
Brassica rapa genome, scaffold: A01.
LR031571.1:8905280-8905299
TGCAGTAGCCTTTACCCAACATGATCCCTG8905280CCAACTCCATCTGCTGTTCAGGGAACGGCATGAAAGGCATAGCGACGGCC
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:8929345-8929364
TGCAGTAGCCTTTACCCAACATGATCCCTG8929345CCAACTCCATCTGCTGTTCAGGGAACGGCATGAAAGGCATAGCGACGGCC
Melanchra persicariae genome assembly, chromosome: 11.
OX376654.1:8363993-8364012
GCTCTTCATCATCATCACTATACGAACTTT8363993CCAACTCCATCTGCTGTTCATCAAACGATTCTAAAACCTGATCCGGTTCC
Melanchra persicariae genome assembly, chromosome: 17.
OX376660.1:7924234-7924253
GCTCTTCATCATCATCACTATACGAACTTT7924234CCAACTCCATCTGCTGTTCATCAAACGATTTTAAAACCTGATCCGGTTCC
Stenodema calcarata genome assembly, chromosome: 10.
OY986057.1:22397052-22397071
AGGAAAGGCAGATAGTTGGCAATAACCGTT22397052CCAACTCCATCTGCTGTTCAACTCATGAACTACACGAATATTTACTCAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAACAGCAGATGGAGTTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAACAGCAGATGGAGTTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.469 | 0.460 | search_plus_done; http://172.18.8.135:50400/match?q=TGAACAGCAGATGGAGTTGG&k=0&no_gap=0&offset=0&limit=50
0.524 | 0.055 | search_minus_done; http://172.18.8.135:50400/match?q=CCAACTCCATCTGCTGTTCA&k=0&no_gap=0&offset=0&limit=40
0.528 | 0.004 | cgi_end;

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