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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 20:55:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Felis catus Senzu DNA, chromosome: B2, American Shorthair breed.
AP023156.1:26940682-26940701
GGTTGCAGTGGGACTACCTAGAGCTGACTG26940682TGAAGGGATCTGAAGCCAGAAGGACCACTATAACAAAGGGAAGTGGCTAA
Microcaecilia unicolor genome assembly, chromosome: 5.
LR594636.1:301948071-301948090
AGGAGGGTAACTAGGACCGTTTCTGTACTA301948071TGAAGGGATCTGAAGCCAGATTGTGATTCATGCAGTATTGAGAATTTGTC
Sequence 10815 from patent US 7834146.
GX742636.1:107-126
TCATCAGCACCTGCAAGAGGCTGAGGATCA107TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGAGGA
Sequence 8847 from patent US 7960612.
GY266894.1:45-64
TCATCAGCACCTGCAAGAGGCTGAGGATCA45TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGAGGA
Sequence 13759 from patent US 8030546.
GY465984.1:45-64
TCATCAGCACCTGCAAGAGGCTGAGGATCA45TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGAGGA
Sequence 10815 from patent US 8106174.
GZ085507.1:107-126
TCATCAGCACCTGCAAGAGGCTGAGGATCA107TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGAGGA
Sequence 19164 from patent US 8362325.
GZ770625.1:689-708
TCATCAGCACCTGCAAGAGGCTGAGGATCA689TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGA
Sequence 19164 from patent US 9701726.
KH862792.1:689-708
TCATCAGCACCTGCAAGAGGCTGAGGATCA689TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGA
Sequence 13759 from patent US 10597667.
MO977137.1:45-64
TCATCAGCACCTGCAAGAGGCTGAGGATCA45TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGAGGA
DG1_18_B09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence.
AW922418.1:48-67
TCATCAGCACCTGCAAGAGGCTGAGGATCA48TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGAGGA
DG1_71_F10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence.
BE361368.1:107-126
TCATCAGCACCTGCAAGAGGCTGAGGATCA107TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGAGGA
RHIZ2_14_C12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA sequence.
BG052752.1:137-156
TCATCAGCACCTGCAAGAGGCTGAGGATCA137TGAAGGGATCTGAAGCCAGAGGACTCGGATCGGTCAAGAACAACTGAGGA
RHIZ2_51_D11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA sequence.
BG241393.1:116-135
TCATCAGCACCTGCAAGAGGCTGAGGATCA116TGAAGGGATCTGAAGCCAGAGGACTCGGATCGGTCAAGAACAACTGAGGA
RHIZ2_47_D06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA sequence.
BG466007.1:91-110
TCATCAGCACCTGCAAGAGGCTGAGGATCA91TGAAGGGATCTGAAGCCAGAGGACTCGGATCGGTCAAGAACAACTGAGGA
DG1_69_G10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence.
BG932988.1:45-64
TCATCAGCACCTGCAAGAGGCTGAGGATCA45TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGAGGA
SCCCLR2C03G08.g LR2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCCCLR2C03G08 5', mRNA sequence.
CA127515.1:127-146
TCATCAGCACCTGCAAGAGGCTGAGGATCA127TGAAGGGATCTGAAGCCAGAGGGCTCGGCTCAGTCAAGAACAACTGAGGA
SCVPRT2073C05.g RT2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCVPRT2073C05 5', mRNA sequence.
CA145783.1:663-682
GTCATCAGCACCTGCAGAAGCTGAGGATCA663TGAAGGGATCTGAAGCCAGAGGGCTCGGCTCATCCAGGAACACTCGAAGA
SCRLFL4104E09.g FL4 Saccharum hybrid cultivar (mixed) cDNA clone SCRLFL4104E09 5', mRNA sequence.
CA253724.1:613-632
TCATCAGCACCTGCAAGAGGCTGAGGATCA613TGAAGGGATCTGAAGCCAGAGGGCTCGGTTCAGTCAAAAACAACTG
Mdfw2026m19.y1 Mdfw Malus domestica cDNA clone Mdfw2026m19 5' similar to TR:O24542 O24542 AUX22D, mRNA sequence.
CN497191.1:224-243
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA224TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGAAGGCATGCA
SUR01-031F-A12-085.b Sugarcane root library Saccharum hybrid cultivar CoS 767 cDNA clone SUR01-031F-A12-085 5', mRNA sequence.
DN235726.1:166-185
TCATCAGCACCTGCAAGAGGCTGAGGATCA166TGAAGGGATCTGAAGCCAGAGGGCTCGGTTCAGTCAAGAACAACTGAGGA
CCGA11988.b1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA11988 5', mRNA sequence.
FL708233.1:723-742
TCATCAGCACCTGCAAGAGGTTGAGGATCA723TGAAGGGATCTGAAGCCAGAGGCCTGGGGTCAGTGAAGAC
CCGI9262.b1 CCGI Panicum virgatum etiolated seedlings (H) Panicum virgatum cDNA clone CCGI9262 5', mRNA sequence.
FL866035.1:137-156
TCATCAGCACCTGCAAGAGGTTGAGGATCA137TGAAGGGATCTGAAGCCAGAGGCCTGGGGTCAGTGAAGAACAACTGAGGT
CCGI11870.b1 CCGI Panicum virgatum etiolated seedlings (H) Panicum virgatum cDNA clone CCGI11870 5', mRNA sequence.
FL870206.1:741-760
CCTTTGACACCTGCAAGAGGTTGAGGATCA741TGAAGGGATCTGAAGCCAGAGGCCTGGGGTCAGTGAGAACA
CCGN433.b1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN433 5', mRNA sequence.
FL881714.1:182-201
TCATCAGCACCTGCAAGAGGTTGAGGATCA182TGAAGGGATCTGAAGCCAGAGGCCTGGGGTCAGTGAAGAACAACTGAGGT
CCGO5713.b1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO5713 5', mRNA sequence.
FL909472.1:519-538
TCATCAGCACCTGCAAGAGGTTGAGGATCA519TGAAGGGATCTGAAGCCAGAGGCCTGGGGTCAGTGAAGAACAACTGAGGT
CCGO11927.b1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO11927 5', mRNA sequence.
FL918670.1:657-676
TCATCAGCACCTGCAAGAGGTTGAGGATCA657TGAAGGGATCTGAAGCCAGAGGCCTGGGGTCAGTGAAGAACAACTGAGTT
CCGO12563.b1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO12563 5', mRNA sequence.
FL919717.1:730-749
TCATCAGCACCTGCAAGAGGTTGAGGATCA730TGAAGGGATCTGAAGCCAGAGGCCTGGGGTCAGTGAAGAACAAC
CCGP16857.b1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP16857 5', mRNA sequence.
FL950306.1:38-57
TCATCAGCACCTGCAAGAGGTTGAGGATCA38TGAAGGGATCTGAAGCCAGAGGCCTGGGGTCAGTGAAGAACAACTGAGGT
UNQ84-F01.x1d-t UNQ (Panicum virgatum cv. Alamo-AP13) Panicum virgatum cDNA 5', mRNA sequence.
JG938969.1:60-79
TCATCAGCACCTGCAAGAGGTTGAGGATCA60TGAAGGGATCTGAAGCCAGAGGCCTGGGGTCAGTGAAGAACAACTGAGGT
MA4LIMFES005C_MA4LIMFES005C_H01_.b_012 MA4LIMFES Musa acuminata cDNA clone MA4LIMFES005C_MA4LIMFES005C_H01_.b_012 5', mRNA sequence.
JK534004.1:231-250
TCATCTCTTCTTGCAGAAGACTGAGGATAA231TGAAGGGATCTGAAGCCAGAGGATTGGGATCAAGACATTAACAACACATC
TSA: Musa acuminata AAA Group Unigene12611_B1 mRNA sequence.
JV358065.1:645-664
TCATCTCTTCTTGCAGAAGACTGAGGATAA645TGAAGGGATCTGAAGCCAGAGGATTAGGATCGAGACATTAACAACACATC
TSA: Musa acuminata AAA Group Unigene13587_NK1 mRNA sequence.
JV436769.1:673-692
TCATCTCTTCTTGCAGAAGACTGAGGATAA673TGAAGGGATCTGAAGCCAGAGGATTAGGATCAAGACATTAACAAGACATC
104_615_11179214_148_36771_057 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11179214, genomic survey sequence.
CW192783.1:553-572
TCATCAGCACCTGCAAGAGGCTGAGGATCA553TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGAGGA
104_814_11475402_148_35939_073 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11475402, genomic survey sequence.
CW321168.1:567-586
TCATCAGCACCTGCAAGAGGCTGAGGATCA567TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGAGGA
Sorghum bicolor cultivar Hongyingzi chromosome 8.
CP137832.1:61988673-61988692
TCATCAGCACCTGCAAGAGGCTGAGGATCA61988673TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGAGGA
Sorghum bicolor cultivar Huandiaonuo chromosome 8.
CP137842.1:61855555-61855574
TCATCAGCACCTGCAAGAGGCTGAGGATCA61855555TGAAGGGATCTGAAGCCAGAGGACTCGGATCAGTCAAGAACAACTGAGGA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:30357465-30357484
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA30357465TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGAAGGCATGCA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:31947475-31947494
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA31947475TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGAAGGCATGCA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:29375312-29375331
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA29375312TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGAAGGCATGCA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:29842732-29842751
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA29842732TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGAAGGCATGCA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:31412147-31412166
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA31412147TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGAAGGCATGCA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:28648919-28648938
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA28648919TGAAGGGATCTGAAGCCAGAGGATTGAGTACTTGTTTCTGAAGGCATGCA
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A04.
HG996469.1:36184229-36184248
TCATCTCTTCTTGCAGAAGACTGAGGATAA36184229TGAAGGGATCTGAAGCCAGAGGATTAGGATCAAGACATTAACAAGACATC
Malus domestica Aux/IAA (IAA24) mRNA, complete cds.
KC019302.1:482-501
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA482TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGA
Musa schizocarpa genome assembly, chromosome: S04.
LS990918.1:40527324-40527343
TCATCTCTTCTTGTAGAAGACTGAGGATAA40527324TGAAGGGATCTGAAGCCAGAGGATTAGGATCAAGACATTAACAACACATC
Malus domestica Auxin responsive protein (IAA28) mRNA, complete cds.
MG189388.1:719-738
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA719TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGAAGGCATGCA
Malus sieversii AUX/IAA-3 protein mRNA, partial cds.
MZ736863.1:482-501
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA482TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGA
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:31193570-31193589
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA31193570TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGAAGGCATGCA
Malus domestica genome assembly, chromosome: 10.
OU696686.1:31193401-31193420
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA31193401TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGAAGGCATGCA
Malus domestica genome assembly, chromosome: 10.
OU744551.1:31380287-31380306
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA31380287TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGAAGGCATGCA
Malus domestica genome assembly, chromosome: 10.
OU744962.1:32095305-32095324
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA32095305TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGAAGGCATGCA
Malus domestica genome assembly, chromosome: 10.
OU745000.1:31204323-31204342
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA31204323TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGAAGGCATGCA
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:29521242-29521261
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA29521242TGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGAAGGCATGCA
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:20981048-20981067
TTGTTTCTTCCTGCAAAAGGCTGAGAATCA20981048TGAAGGGATCTGAAGCCAGAGGATTGAGTACTTGTTTCTGAAGGCATGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAAGGGATCTGAAGCCAGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAAGGGATCTGAAGCCAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.180 | 1.171 | search_plus_done; http://172.18.8.135:50400/match?q=TGAAGGGATCTGAAGCCAGA&k=0&no_gap=0&offset=0&limit=50
1.232 | 0.052 | search_minus_done; http://172.18.8.135:50400/match?q=TCTGGCTTCAGATCCCTTCA&k=0&no_gap=0&offset=0&limit=0
1.232 | 0.000 | cgi_end;

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