GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-12 07:30:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrrhosoma nymphula genome assembly, chromosome: 8.
OY754335.1:45439578-45439597
GGGCTCGTGTGCTCCAATGACCCCTAGAGC45439578TGAAGTGGGGGGAGCAATGCTCCTGGTAGAGCCATCCATTCCAGATAGGT
CGN-33509 Leaf Coffea canephora cDNA clone cccl9j21 5', mRNA sequence.
DV690208.1:237-256
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA237GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT
CC-F01_014_B05 Cherry of different development stage Coffea canephora cDNA clone CC-F01_014_B05, mRNA sequence.
EE198840.1:210-229
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA210GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT
CA00-XX-LP1-004-C04-EB.F Coffea arabica LP1 Coffea arabica cDNA clone CA00-XX-LP1-004-C04-EB, mRNA sequence.
GT673486.1:241-260
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA241GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT
CA00-XX-IC1-010-B09-EC.F Coffea arabica IC1 Coffea arabica cDNA clone CA00-XX-IC1-010-B09-EC, mRNA sequence.
GW435116.1:197-216
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA197GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTGCTGCC
CA00-XX-RX1-015-A07-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-015-A07-EB, mRNA sequence.
GW443421.1:206-225
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA206GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT
CA00-XX-RM1-045-G08-EQ.F Coffea arabica RM1 Coffea arabica cDNA clone CA00-XX-RM1-045-G08-EQ, mRNA sequence.
GW476878.1:202-221
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA202GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT
CA00-XX-LV8-021-E11-CE.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-021-E11-CE, mRNA sequence.
GW479271.1:171-190
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA171GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT
CA00-XX-FB2-011-F06-EP.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-011-F06-EP, mRNA sequence.
GW485388.1:325-344
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA325GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAAGTGGGGGGAGCAATGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAAGTGGGGGGAGCAATGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.107 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=TGAAGTGGGGGGAGCAATGC&k=0&no_gap=0&offset=0&limit=50
0.658 | 0.552 | search_minus_done; http://172.18.8.135:50400/match?q=GCATTGCTCCCCCCACTTCA&k=0&no_gap=0&offset=0&limit=49
0.664 | 0.005 | cgi_end;

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