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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 08:42:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Arvicola amphibius genome assembly, chromosome: 2.
LR862381.2:14838402-14838422
AGGCAAGTGAGCACGACTTGGGTCTGAGGA14838402TGAGAGGGATAAACCTGGAGGATTGGATGAGCTCAAGACTGGATGTGTAGG
GLE070_D10_037 Cyamopsis tetragonoloba (L.) Taub seeds at early developmental stage Cyamopsis tetragonoloba cDNA, mRNA sequence.
EG988264.1:128-148
ATAAGGGACATTTGTGATTATGCCTTCACT128TGAGAGGGATAAACCTGGAGGAATGGGTAGCACCAATACCAGGTCTTCCGT
65JKBNM0_T3_006_H11_16MAR2005_081 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587223.1:160-180
ATGACTCTAAGAAGAGTGAGATCATTCACT160TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
65JKBNM0_T3_007_G06_16MAR2005_036 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587295.1:160-180
ATGACTCTAAGAAGAGTGAGATCATTCACT160TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
65JKBNM0_T3_018_B10_17MAR2005_078 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL588194.1:91-111
AATAACACAGACTAGAGTAGATTCTTCACT91TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
65JKBNM0_T3_025_A06_18MAR2005_048 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL588778.1:192-212
AATAACACAGACTAGAGTAGATTCTTCACT192TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
65JKBNM0_T3_037_C09_18MAR2005_075 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL589798.1:135-155
CATGACTCTAAGAAGAATAGATCATTCACT135TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
65JKBNMO_UP_057_F02_18JUL2006_006 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL591458.1:204-224
AATAACACAGACTAGAGTAGATTCTTCACT204TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
65JKBNMO_UP_061_D10_17JUL2006_074 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL591745.1:154-174
AATAACACAGACTAGAGTAGATTCTTCACT154TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
65JKBNMO_UP_074_A05_18JUL2006_047 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL592706.1:69-89
GATAACACAGACTAGAGTAGATTCTTCACT69TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
65JKBNMO_UP_077_E09_18JUL2006_071 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL592953.1:154-174
AATAACACAGACTAGAGTAGATTCTTCACT154TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
RR1AS40JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EV531285.1:15-35
GTAAATTAATTATT15TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
RR1B954JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EV532436.1:117-137
AATAACACAGACTGGAGTAGATTAATTATT117TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
RR2AP92JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV541365.1:161-181
CATGGCTATAATAAGAGTAGATCATTCACT161TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
RS2B748JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW730388.1:161-181
AATAACATAGACTAGAGTAGATTAATTATT161TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTTCCGT
RR3C292JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX767481.1:193-213
CATGGCTATAATAAGAGTAGATCATTCACT193TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
RS1BP52JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX891321.1:182-202
CATGGCTATAATAAGAGTAGATCATTCAAT182TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
RR2EA26JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY904347.1:177-197
AATAAGACAGACTAGAGTAGATTGATTATT177TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
RS1DB06JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EY926656.1:177-197
AATAACATAGACTAGAGTAGATTAATTATT177TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTTCCGT
RS3E003JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EY944857.1:180-200
CATGGCTATAATAAGAGTAGATCATTCACT180TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
RR2ER17JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD537319.1:221-241
CATGTCTATAATAAGAGTAGATCATTCACT221TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
RR3FO65JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD547597.1:172-192
AACACATGGCTATAATAAGAGTAGATCATT172TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
RS1EG86JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD565126.1:176-196
CATGGCTATAATAAGAGTAGATCATTCACT176TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
RS1GA36JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD935302.1:182-202
CATGGCTATAATAAGAGTAGATCATTCACT182TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
BoBF21 Brassica oleracea var. italica microspore Library Brassica oleracea var. italica cDNA, mRNA sequence.
GR301407.1:54-74
CATGACTCTAAGAAGAATAGATCATTCACT54TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
BoCF21 Brassica oleracea var. capitata microspore Library Brassica oleracea var. capitata cDNA, mRNA sequence.
GR301431.1:54-74
CATGACTCTAAGAAGAATAGATCATTCACT54TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
LERAM31TR LERA Arabidopsis thaliana genomic clone LERAM31, genomic survey sequence.
AQ956829.1:348-368
ATAGATATGGAGATAAGTAGCTTCTTCACT348TGAGAGGGATAAACCTGGAGGCATTGGTAGCACCAACACCAGGCCTACCGT
KBrB046B17F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB046B17, genomic survey sequence.
DX044954.1:795-815
AAGAAGCAAAAGTAGAGTAGATTCTTCACT795TGAGAGGGATAAACCTGGAGGAGTTAGTGGCGCCAACACCAGGCCTACCGT
KBrH050O17F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH050O17, genomic survey sequence.
DX913031.1:609-629
AAGAAGCAAAAGTAGAGTAGATTCTTCACT609TGAGAGGGATAAACCTGGAGGAGTTAGTGGCGCCAACACCAGGCCTACCGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB009G06, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces.
AC240986.1:1529-1549
AAGAAGCAAAAGTAGAGTAGATTCTTCACT1529TGAGAGGGATAAACCTGGAGGAGTTAGTGGCGCCAACACCAGGCCTACCGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070G10, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC241060.1:27227-27247
AAGAAGCAAAAGTAGAGTAGATTCTTCACT27227TGAGAGGGATAAACCTGGAGGAGTTAGTGGCGCCAACACCAGGCCTACCGT
Arabidopsis thaliana transposon insertion STS GT_5.106732.
CR381278.1:242-262
ATAGATATGGAGATAAGTAGCTTCTTCACT242TGAGAGGGATAAACCTGGAGGCATTGGCAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006C14, complete sequence.
AC189554.2:134162-134182
AAGAAGCAAAAGTAGAGTAGATTCTTCACT134162TGAGAGGGATAAACCTGGAGGAGTTAGTGGCGCCAACACCAGGCCTACCGT
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 7.
CP094637.1:4116260-4116280
CTCTGTAATAAGAGCTTTGATCTTTTCACT4116260TGAGAGGGATAAACCTGGAGGAATTGGTAGCACCAACACCAGGCCTACCGT
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:1679664-1679684
ATGACTCTAAGAAGAGTGAGATCATTCACT1679664TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:1649212-1649232
AATAACACAGACTAGAGTAGATTCTTCACT1649212TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
Camelina sativa cultivar CO46 chromosome 11.
CP131541.1:36110069-36110089
CTTCCCTTAGAGTCTTGCATTGGCTTCACT36110069TGAGAGGGATAAACCTGGAGGAATTGGTAGCACCAACACCAGGCCTACCGT
Camelina sativa cultivar CO46 chromosome 13.
CP131543.1:3563117-3563137
CTCTGTAATAAGAGCTTTGATCTTTTCACT3563117TGAGAGGGATAAACCTGGAGGAATTGGTAGCACCAACACCAGGCCTACCGT
Camelina sativa cultivar CO46 chromosome 18.
CP131548.1:4862764-4862784
AACAATATAGAGTCTTGCATTGGCTTCACT4862764TGAGAGGGATAAACCTGGAGGAATTGGTAGCACCAACACCAGGCCTACCGT
Camelina sativa cultivar CO46 chromosome 20.
CP131551.1:3617912-3617932
CTCTGTAACGAGAGCTTTGATCTTTTCACT3617912TGAGAGGGATAAACCTGGAGGAATTGGTAGCACCAACACCAGGCCTACCAT
Capsella bursa-pastoris isolate WGS_leaf chromosome 8.
CP144190.1:2074540-2074560
TATCGAGTTTAGTCTTGCATTGGCTTCACT2074540TGAGAGGGATAAACCTGGAGGAGTTGGTAGCACCAACACCAGGCCTACCGT
Capsella bursa-pastoris isolate WGS_leaf chromosome 14.
CP144196.1:2909153-2909173
ACTCTGTGATAAGAGCTTTGGTCTTTCACT2909153TGAGAGGGATAAACCTGGAGGAATTGGTAGCACCAACACCAGGCCTACCGT
Capsella bursa-pastoris isolate WGS_leaf chromosome 16.
CP144198.1:2176440-2176460
GCTTAGTCTTGCTCTTGCATTGGCTTCACT2176440TGAGAGGGATAAACCTGGAGGAGTTGGTAGCACCAACACCAGGCCTACCGT
Brassica napus genome assembly, chromosome: A02.
HG994356.1:1477119-1477139
ATGACTCTAAGAAGAGTGAGATCATTCACT1477119TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:1701021-1701041
AATAACACAGACTAGAGTAGATTCTTCACT1701021TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
Brassica napus genome assembly, chromosome: C02.
HG994366.1:2193793-2193813
CATGACTCTAAGAAGAATAGATCATTCACT2193793TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:2084867-2084887
AATAACACAGACTAGAGTAGATTCTTCACT2084867TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
Brassica rapa genome, scaffold: A03.
LR031572.1:1649430-1649450
AAGAAGCAAAAGTAGAGTAGATTCTTCACT1649430TGAGAGGGATAAACCTGGAGGAGTTAGTGGCGCCAACACCAGGCCTACCGT
Brassica rapa genome, scaffold: A02.
LR031573.1:1504868-1504888
ATGACTCTAAGAAGAGTGAGATCATTCACT1504868TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:2079588-2079608
AATAACACAGACTAGAGTAGATTCATCACT2079588TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:2279215-2279235
CATGACTCTAAGAAGAATAGATCATTCACT2279215TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:1618219-1618239
AATAACACAGACTGGAGTAGATTAATTATT1618219TGAGAGGGATAAACCTGGAGGAGTTAGTGGCACCAACACCAGGCCTACCGT
Arabidopsis arenosa genome assembly, chromosome: 6.
LR999456.1:3419449-3419469
AGACTCTCCACAAGAGCTTGATTATTCACT3419449TGAGAGGGATAAACCTGGAGGAATTGGTAGCACCAACACCAGGTCTACCGT
Arabidopsis arenosa genome assembly, chromosome: 8.
LR999458.1:3031295-3031315
ACAGATTTGGAGATAAGTAGCTTCTTCACT3031295TGAGAGGGATAAACCTGGAGGAATTGGTAGCACCAACACCAGGCCTACCGT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:1534372-1534392
ATGACTCTAAGAAGAGTGAGATCATTCACT1534372TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:1650278-1650298
AAGAAGCAAAAGTAGAGTAGATTCTTCACT1650278TGAGAGGGATAAACCTGGAGGAGTTAGTGGCGCCAACACCAGGCCTACCGT
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:30914991-30915011
CATGGCTATAATAAGAGTAGATCATTCACT30914991TGAGAGGGATAAACCTGGAGGAATTGGTGGCACCAACACCAGGCCTACCAT
Cardamine flexuosa genome assembly, chromosome: 3.
OY743216.1:3012595-3012615
CAATAGTGAAGTCTTGTAATGGCTTTCACT3012595TGAGAGGGATAAACCTGGAGGAATTGGTTGCACCAACACCAGGTCTACCGT
Cardamine flexuosa genome assembly, chromosome: 3.
OY743216.1:3014141-3014161
TGACACACTTCGTAGAAGAAGTAATTCACT3014141TGAGAGGGATAAACCTGGAGGAATTGGTAGCACCAACACCAGGCCTACCAT
Draba incana genome assembly, chromosome: 10.
OY755211.1:2936702-2936722
CACTCTTGTATAAAGAGCTTATTAATCACT2936702TGAGAGGGATAAACCTGGAGGAATTGGTAGCACCAACACCAGGCCTACCGT
Nasturtium officinale genome assembly, chromosome: 11.
OY978509.1:2362788-2362808
TGACACACTCCGTAGAAGAAGCTATTCACT2362788TGAGAGGGATAAACCTGGAGGAATTGGTAGCACCAACACCAGGCCTACCGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAGAGGGATAAACCTGGAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGAGGGATAAACCTGGAGG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.837 | 1.829 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGAGGGATAAACCTGGAGG&k=0&no_gap=0&offset=0&limit=50
1.894 | 0.057 | search_minus_done; http://172.18.8.135:50400/match?q=CCTCCAGGTTTATCCCTCTCA&k=0&no_gap=0&offset=0&limit=0
1.894 | 0.000 | cgi_end;

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