GGGenome | Results

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2025-04-17 11:04:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Colias eurytheme genome assembly, chromosome: 21.
OU015413.1:486207-486226

CGGAAATTTATTTTTCATACCTGTAAGTGA486207TGAGAGTAGGGCGGACTGTTTTTCGGGACAGCTAGTGGACTATAATAATT

Dianthus caryophyllus mRNA, clone: CES07N09, 5' end sequence.
FY385060.1:169-188

CTCAACCGGTCACCATCCCCTCCTTCCCTG169AACAGTCCGCCCTACTCTCAGGCTGCCCGGTCAACCTGCCCGCCGCACTC

Dianthus caryophyllus mRNA, clone: CES09J16, 5' end sequence.
FY385732.1:171-190

CTCAACCGGTCACCATCCCCTCCTTCCCTG171AACAGTCCGCCCTACTCTCAGGCTGCCCGGTCAACCTGCCCGCCGCACTC

Dianthus caryophyllus mRNA, clone: CFES21N24, 5' end sequence.
FY402020.1:275-294

CTCAACCGGTCACCATCCCCTCCTTCCCTG275AACAGTCCGCCCTACTCTCAGGCTGCCCGGTCAACCTGCCCGCCGCACTC

TSA: Dianthus caryophyllus mRNA, contig: CAK09.613.C1.
FX297774.1:274-293

CTCAACCGGTCACCATCCCCTCCTTCCCTG274AACAGTCCGCCCTACTCTCAGGCTGCCCGGTCAACCTGCCCGCCGCACTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.010 | 0.010 | search_start;
0.128 | 0.118 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGAGTAGGGCGGACTGTT&k=0&no_gap=0&offset=0&limit=50
0.397 | 0.269 | search_minus_done; http://172.18.8.135:50400/match?q=AACAGTCCGCCCTACTCTCA&k=0&no_gap=0&offset=0&limit=49
0.401 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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