GGGenome | Results

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2025-04-17 07:09:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Erinaceus europaeus genome assembly, chromosome: 12.
OX485822.1:30522683-30522702

TTCAGAAATTTGTAATATCAGTTTGATGTT30522683TGATGGAGAGTGGGTTGTGCTATAGTTACATGTAAAGAGGTTCTATTTTC

Gymnoscopelus microlampas genome assembly, chromosome: 20.
OY732722.1:5311649-5311668

TAAAACATGGGAGTACTTTTTTTCCATCGC5311649TGATGGAGAGTGGGTTGTGCGTGTAAAATACTGAACTTCCGATTGGACGC

Sequence 155 from Patent WO2012088289.
JA817818.1:2-21

T2TGATGGAGAGTGGGTTGTGCT

Sequence 155 from patent US 9702013.
KH919345.1:2-21

T2TGATGGAGAGTGGGTTGTGCT

Sequence 155 from patent US 10590490.
MO959622.1:2-21

T2TGATGGAGAGTGGGTTGTGCT

odd95b05.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH965245.1:340-359

ATGAAAAGAGTAGTAAAGAACATGATTGAA340TGATGGAGAGTGGGTTGTGCTAACGGTCAATTTTTGTGATTCCAAACGAT

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
AC189269.2:85851-85870

ATGAAAAGAGTAGTAAAGAACCTGATTGAT85851TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB087M20, complete sequence.
AC189502.2:13122-13141

ATGAAAAGAGTAGTAAAGAACCTGATTGAT13122TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT

Brassica napus microsatellite Y49F131-1 sequence.
JX131190.1:221-240

ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT

Brassica napus microsatellite Y49F131-9 sequence.
JX131191.1:221-240

ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT

Brassica napus microsatellite Y49F132-1 sequence.
JX131192.1:221-240

ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT

Brassica napus microsatellite Y49F132-2 sequence.
JX131193.1:221-240

ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT

Brassica napus microsatellite Y49F133-9 sequence.
JX131195.1:221-240

ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT

Brassica napus microsatellite Y49F135-5 sequence.
JX131197.1:221-240

ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTCGTGATCCCAAGCGAT

Brassica napus microsatellite Y49F136-9 sequence.
JX131199.1:221-240

ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT

Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:51820039-51820058

ATGAAAAGAGTAGTAAAGAACATGATTGAA51820039TGATGGAGAGTGGGTTGTGCTAACGGTCAATTTTTGTGATTCCAAACGAT

Sequence 15 from Patent WO2012088289.
JA817678.1:522-541

ATCGCTTGGGATCACAACAATTTCCTGTTA522GCACAACCCACTCTCCATCAATCAATCAGGGTCTTTACTACTCTTTTCAT

Sequence 15 from patent US 9702013.
KH919205.1:522-541

ATCGCTTGGGATCACAACAATTTCCTGTTA522GCACAACCCACTCTCCATCAATCAATCAGGGTCTTTACTACTCTTTTCAT

Sequence 15 from patent US 10590490.
MO959482.1:522-541

ATCGCTTGGGATCACAACAATTTCCTGTTA522GCACAACCCACTCTCCATCAATCAATCAGGGTCTTTACTACTCTTTTCAT

lkz42c03.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ059013.1:666-685

ATCGTTTGGAATCACAAAAATTGACCGTTA666GCACAACCCACTCTCCATCATTCAATCATGTTCTTTACTACTCTTTTCAT

Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:58370011-58370030

ATCGCTTGGGATCACAACAATTTCCTGTTA58370011GCACAACCCACTCTCCATCAATCAATCAGGTTCTTTACTACTCTTTTCAT

Brassica napus genome assembly, chromosome: A09.
HG994363.1:42252841-42252860

ATCGCTTGGGATCACAACAATTTCCTGTTA42252841GCACAACCCACTCTCCATCAATCAATCAGGTTCTTTACTACTCTTTTCAT

Brassica rapa genome, scaffold: A09.
LR031568.1:46586640-46586659

ATCGCTTGGGATCACAACAATTTCCTGTTA46586640GCACAACCCACTCTCCATCAATCAATCAGGTTCTTTACTACTCTTTTCAT

Brassica rapa genome assembly, chromosome: A09.
LS974625.2:57053319-57053338

ATCGCTTGGGATCACAACAATTTCCTGTTA57053319GCACAACCCACTCTCCATCAATCAATCAGGTTCTTTACTACTCTTTTCAT

Synechococcus sp. SYN20 chromosome, complete genome.
CP047959.1:511997-512016

AAAATTCCAATCCGTAGGCTACGGCGTAGC511997GCACAACCCACTCTCCATCATCCGCAGCACGATTTAAGGCCTGAATGCAA

Melangyna quadrimaculata genome assembly, chromosome: 3.
OX439485.1:157104097-157104116

TTTAGACGAGAACCTCATAATTATGATAAA157104097GCACAACCCACTCTCCATCAAACTGAGATCTATCAGCAAATGCTTGCCGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGATGGAGAGTGGGTTGTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGATGGAGAGTGGGTTGTGC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.274 | 0.265 | search_plus_done; http://172.18.8.135:50400/match?q=TGATGGAGAGTGGGTTGTGC&k=0&no_gap=0&offset=0&limit=50
0.470 | 0.196 | search_minus_done; http://172.18.8.135:50400/match?q=GCACAACCCACTCTCCATCA&k=0&no_gap=0&offset=0&limit=34
0.477 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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