GGGenome | Results

2025-04-10 22:49:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

>POR13-J03.x1d-t Populus trichocarpa, 101-74 genotype, BAC end sequences, HINDIII BAC library Populus trichocarpa genomic 5', genomic survey sequence.
HN288004.1:339-360

TATTGGATATTATAAAATGCGTATTTACAC339TGCAGAATAGATGGCTAATGGCAGTTCAAAAATGTGTTAGGTCAACCATAAA

Populus nigra genome assembly, chromosome: 2.
OX637673.1:41523416-41523437

TTTATGGTTGACCTAACACATTTTTGAACT41523416GCCATTAGCCATCTATTCTGCAGTGTAAATACGCATTTTATAATATCCAATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.142 | 0.133 | search_plus_done; http://172.18.8.135:50400/match?q=TGCAGAATAGATGGCTAATGGC&k=0&no_gap=0&offset=0&limit=50
0.166 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=GCCATTAGCCATCTATTCTGCA&k=0&no_gap=0&offset=0&limit=49
0.167 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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