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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 18:46:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

0080620 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV156758.1:542-561
TGCAAATCAACTTCCTGCACAGATCTCTTC542TGCATGTAGTCAATTTCGGCGAATAAGAGTTCATTCTTCTTGGATCTGAT
RS1AX74JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW720823.1:454-473
TGCAAATCAACTTCCTGCTCAAATTTCTTC454TGCATGTAGTCAATTTCGGCGAATAAGAGTTCATTCTTTTTGGATCGTAT
RS3AX58JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW738747.1:434-453
TTATCGTTATGCAAATCAACTTCTCTCTTC434TGCATGTAGTCAATTTCGGCGAATAAGAGTTCATTCTTCTTGGATCGGAT
BR024135 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-066D04 5', mRNA sequence.
EX039491.1:438-457
TTATCGTTATGCAAATCAACTTCTCTCTTC438TGCATGTAGTCAATTTCGGCGAATAAGAGTTCGTTCTTCTTGGATCGGAT
RR2CD38JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX760303.1:518-537
TGCAAATCAGCCTCCTGCATAGATCGCTTC518TGCATGTAGTCAATTTCGGCAAATAAGAGTTCATTCTTCTTAGATCGGAT
RR2CP49JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX761103.1:495-514
TGCAAATCAACTTCCTGCACAGATCTCTTC495TGCATGTAGTCAATTTCGGCGAATAAGAGTTCATTCTTCTTGGATCGGAT
RS1BO16JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX891236.1:477-496
TTATCGTTATGCAAATCAACTTCTTTCTTC477TGCATGTAGTCAATTTCGGCGAATAAGAGTTCATTCTTTTTGGATCGTAT
RR1E842JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY896143.1:459-478
TTATCACTTTGCAAATCAGCCTCTCGCTTC459TGCATGTAGTCAATTTCGGCAAATAAGAGTTCATTCTTCTTAGATCGGAT
RR3EF80JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY912814.1:446-465
TGCAAATCAACTTCCTGCACAGATCTCTTC446TGCATGTAGTCAATTTCGGCGAATAAGAGTTCATTCTTCTTGGATCGGAT
RS3EO38JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD581629.1:458-477
TTATCGTTATGCAAATCAACTTCTCTCTTC458TGCATGTAGTCAATTTCGGCGAATAAAAGTTCATTCTTCTTGGATCGGAT
RS3FP25JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD584271.1:461-480
TTATCGTTATGCAAATCAACTTCTCTCTTC461TGCATGTAGTCAATTTCGGCGAATAAGAGTTCATTCTTCTTGGATCGGAT
RS3G528JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD951227.1:412-431
TTATCACTATGCAAATCAGCCTCTCGCTTC412TGCATGTAGTCAATTTCGGCAAATAAGAGTTCATTCTTCTTAGATCGGAT
RS3H134JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD953500.1:448-467
TTATCGTTATGCAAATCAACTTCTCTCTTC448TGCATGTAGTCAATTTCGGCGAATAAAAGTTCATTCTTCTTGGATCGGAT
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:48658487-48658506
TTGGATATAACATGGTTTCTTACTCTCTTC48658487TGCATGTAGTCAATTTCGGCGAATAAGAGTTCATTCTATACAAAAATATA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:10637224-10637243
CTAGATGTAGTATATCTGCTTACTCTCTTC10637224TGCATGTAGTCAATTTCGGCGAATAAGAGTTCATTCTGTAAACATATTTA
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:8211777-8211796
TTAGATATAATTTGGTTTCTTACTCTCTTC8211777TGCATGTAGTCAATTTCGGCGAATAAGAGTTCATTCTATGAAAAGTACAA
Raphanus sativus genome assembly, chromosome: 8.
OY743205.1:12544187-12544206
TTAGATGTAACATATCTTCTTACTTTCTTC12544187TGCATGTAGTCAATTTCGGCGAATAAGAGTTCATTCTGTAAAAATATTCA
Pseudomonas azotoformans strain F77 chromosome, complete genome.
CP019856.1:1672939-1672958
TGCAGACTCATGGCATCAAGGACATCCAGG1672939TGCATGTAGTCAATTTCGGCGCCAATGACGTTAACTACAACATCATCCGG
Pseudomonas pergaminensis strain 1008 chromosome, complete genome.
CP078013.1:1617656-1617675
TGCAGACTCATGGCATCAAGGACATCCAGG1617656TGCATGTAGTCAATTTCGGCGCCAATGACGTTAACTACAACATCATCCGG
Pseudomonas sp. DR208 chromosome, complete genome.
CP081944.1:1835721-1835740
TGCAGACTCATGGCATCAAGGACATCCAGG1835721TGCATGTAGTCAATTTCGGCGCCAATGACGTTAACTACAACACCCTCCGG
Pseudomonas azotoformans strain ZY-1 chromosome, complete genome.
CP092830.1:1672899-1672918
TGCAGACTCATGGCATCAAGGACATCCAGG1672899TGCATGTAGTCAATTTCGGCGCCAATGACGTTAACTACAACATCATCCGG
Sequence 3 from patent US 5744693.
AR003862.1:615-634
ATCCGATCCAAGAAGAACGAACTCTTATTC615GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
Sequence 9490 from patent US 7960612.
GY267537.1:615-634
ATCCGATCCAAGAAGAACGAACTCTTATTC615GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
Sequence 15369 from patent US 8030546.
GY467594.1:615-634
ATCCGATCCAAGAAGAACGAACTCTTATTC615GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
Sequence 15369 from patent US 10597667.
MO978747.1:615-634
ATCCGATCCAAGAAGAACGAACTCTTATTC615GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
BNDH5DCT_UP_019_G01_26JAN2004_003 Brassica napus BNDH5DCT Brassica napus cDNA 5', mRNA sequence.
CN727604.1:426-445
TCCGATCCAAGAAGAACGAACTTCTTATTC426GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
49-E022739-021-013-B13-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022B1313Q, mRNA sequence.
CX191848.1:32-51
CCACGCGTCCGACAGAATGAACTCTTATTC32GCCGAAATTGACTACATGCAGAAGAGAGTAAGCAGATATACTACATCTAG
23-E019365-021-009-N05-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022N059Q, mRNA sequence.
CX194148.1:562-581
ATACGATCCAAAAAGAATGAACTCTTATTC562GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAGCGATAA
Brassica oleracea var. viridis mRNA, clone: KALE-066N14, 5' end sequence.
DK481100.1:588-607
ATACGATCCAAAAAGAATGAACTCTTATTC588GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAGCGATAA
Brassica oleracea var. viridis mRNA, clone: KALE-077I21, 5' end sequence.
DK485201.1:613-632
ATCAGATCCAAGAAGAATGAACTCTTATTC613GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
Brassica oleracea var. viridis mRNA, clone: KALE-066N14, 3' end sequence.
DK540698.1:349-368
ATACGATCCAAAAAGAATGAACTCTTATTC349GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAGCGATAA
Brassica oleracea var. viridis mRNA, clone: KALE-077I21, 3' end sequence.
DK544794.1:318-337
ATCAGATCCAAGAAGAATGAACTCTTATTC318GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
0096141 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV152870.1:637-656
ATCCGATCCAAGAAGAACGAACTCTTATTC637GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
0080529 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV156667.1:620-639
ATCAGATCCAAGAAGAATGAACTCTTATTC620GCCGAAATTGACTACATGCAGAAGAGATCTGTGCAGGAAGTTGATTTGCA
RS1AX74TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW717200.1:607-626
ATACGATCCAAAAAGAATGAACTCTTATTC607GCCGAAATTGACTACATGCAGAAGAAATTTGAGCAGGAAGTTGATTTGCA
RS3AX58TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW733706.1:571-590
ATCCGATCCAAGAAGAATGAACTCTTATTC571GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGAT
BR030028 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-144D10 5', mRNA sequence.
EX045384.1:573-592
ATCCGATCCAAGAAGAACGAACTCTTATTC573GCCGAAATTGACTACATGCAGAAGAGATCTGTGCAGGAAGTTGATTTGCA
BR034770 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-055F08 5', mRNA sequence.
EX050126.1:579-598
ATCCGATCCAAGAAGAACGAACTCTTATTC579GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
BR035577 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-066F11 5', mRNA sequence.
EX050933.1:579-598
ATCCGATCCAAGAAGAACGAACTCTTATTC579GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
RR2CD38TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX756511.1:523-542
ATCCGATCTAAGAAGAATGAACTCTTATTT523GCCGAAATTGACTACATGCAGAAGCGATCTATGCAGGAGGCTGATTTGCA
RR2CP49TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX757533.1:600-619
ATCCGATCCAAGAAGAATGAACTCTTATTC600GCCGAAATTGACTACATGCAGAAGAGATCTGTGCAGGAAGTTGATTTGCA
RR3C158TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX763276.1:310-329
ATCCGATCCAAGAAGAATGAACTCTTATTC310GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
RS1BO16TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX886971.1:613-632
ATACGATCCAAAAAGAATGAACTCTTATTC613GCCGAAATTGACTACATGCAGAAGAAAGAAGTTGATTTGCATAACGATAA
RR1E842TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY900652.1:266-285
ATCCGATCTAAGAAGAATGAACTCTTATTT266GCCGAAATTGACTACATGCAGAAGCGAGAGGCTGATTTGCAAAGTGATAA
RR2EA51TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY908706.1:168-187
ATCCGATCCAAGAAGAATGAACTCTTATTC168GCCGAAATTGACTACATGCAGAAGAGATCTGTGCAGGAAGTTGATTTGCA
RR3EF80TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY917270.1:611-630
ATCCGATCCAAGAAGAATGAACTCTTATTC611GCCGAAATTGACTACATGCAGAAGAGATCTGTGCAGGAGTTGATTTGCAT
RS3EO38TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD577301.1:590-609
ATCCGATCCAAGAAGAATGAACTCTTATTC590GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
RS3FP25TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD580492.1:606-625
ATCCGATCCAAGAAGAATGAACTCTTATTC606GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
RS3G528TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD955121.1:604-623
ATCCGATCTAAGAAGAATGAACTCTTATTT604GCCGAAATTGACTACATGCAGAAGCGAGAGGCTGATTTGCATAGTGATAA
RS3H134TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD957888.1:606-625
ATCCGATCCAAGAAGAATGAACTCTTATTC606GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
RR3GD13TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD979499.1:612-631
ATCCGATCCAAGAAGAATGAACTCTTATTC612GCCGAAATTGACTACATGCAGAAGAGATCTGTGCAGGAAGTTGATTTGCA
13089963 CERES-CL13 Zea mays cDNA clone 1383348 5', mRNA sequence.
FL092097.1:525-544
ATCAGATCCAAGAAGAATGAACTCTTATTC525GCCGAAATTGACTACATGCAGAAGAG
BNAOV1GH_T3_030_D07_12JULY2007_057 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR442291.1:570-589
ATCCGATCCAAGAAGAACGAACTCTTATTC570GCCGAAATTGACTACATGCAGAAGAGATCTGTGCAGGAAGTTGATTTGCA
BOGEW83TF BOGE Brassica oleracea genomic clone BOGEW83, genomic survey sequence.
BH549585.1:487-506
TAAATATGTTTACAGAATGAACTCTTATTC487GCCGAAATTGACTACATGCAGAAGAGAGTAAGCAGATATACTACATCTAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB060L22, complete sequence.
AC232508.1:28309-28328
ATTTTTTTTTTATAGAACGAACTCTTATTC28309GCCGAAATTGACTACATGCAGAAGAGAGTAAGAAACCATATTATATCTAC
Brassica napus cultivar Darmor AG1 gene, AG1-DN allele, partial cds.
AF056525.1:172-191
TTTTTTTTTTNATAGAACGAACTCTTATTC172GCCGAAATTGACTACATGCAGAAGAGAGTAAGAANCCATATTATATCTAC
Brassica napus cultivar Darmor AG2 gene, AG2-DN allele, partial cds.
AF056526.1:186-205
TATATTTTTGTATAGAATGAACTCTTATTC186GCCGAAATTGACTACATGCAGAAGAGAGTAAGAAACCATATTATATCCAA
Brassica oleracea cultivar Rapide Cycling AG1 gene, AG1-RC allele, partial cds.
AF056529.1:138-157
TATATTTTTGTATAGAATGAACTCTTATTC138GCCGAAATTGACTACATGCAGAAGAGAGTAAGAAACCATGTTATATCCAA
Brassica rapa cultivar R500 AG1 gene, AG1-R500 allele, partial cds.
AF056530.1:172-191
TATTTTTTTTTATAGAACGAACTCTTATTC172GCCGAAATTGACTACATGCAGAAGAGAGTAAGAAACAATTTTATATCTAC
Brassica oleracea cultivar Rapide Cycling AG2 gene, AG2-RC allele, partial cds.
AF056531.1:204-223
TAAATATGTTTACAGAATGAACTCTTATTC204GCCGAAATTGACTACATGCAGAAGAGAGTACGCAGATATACTACATCTAG
Eruca sativa AGAMOUS-like protein EsAG2 mRNA, partial cds.
AY277687.1:438-457
ATCCGGTCCAAGAAGAATGAACTCTTATTC438GCCGAAATTGACTACATGCAGAAGAGAGAAGTGGATTTGCACAACGATAA
Eruca sativa AGAMOUS-like protein EsAG1 mRNA, partial cds.
AY277688.1:438-457
ATCCGGTCCAAGAAGAATGAACTCTTATTC438GCCGAAATTGACTACATGCAGAAGAGATCTCTGCAGGAAGTGGATTTGCA
Guillenia flavescens AGAMOUS-like protein GfAG1 mRNA, partial cds.
AY277689.1:438-457
ATCCGATCCAAGAAGAATGAACTCTTATTC438GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
Guillenia flavescens AGAMOUS-like protein GfAG2 mRNA, partial cds.
AY277693.1:438-457
ATCCGATCCAAGAAGAACGAACTCTTATTC438GCCGAAATTGACTACATGCAGAAGAGATCTTTGCAGGAAGTTGATTTGCA
Guillenia flavescens AGAMOUS-like protein GfAG3 mRNA, partial cds.
AY277694.1:438-457
ATCCGATCCAAGAAGAACGAACTCTTATTC438GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:5262994-5263013
ATTTTTTTTTTATAGAACGAACTCTTATTC5262994GCCGAAATTGACTACATGCAGAAGAGAGTAAGAAACCATATTATATCTAC
Brassica juncea AGAMOUS (AG) mRNA, complete cds.
DQ060334.1:490-509
ATCCGATCCAAGAAGAACGAACTCTTATTC490GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:5505742-5505761
TTTTTTTTTTTATAGAACGAACTCTTATTC5505742GCCGAAATTGACTACATGCAGAAGAGAGTAAGAAACCATATTATATCTAC
Brassica napus genome assembly, chromosome: C01.
HG994365.1:7805659-7805678
TATATTTTTGTATAGAATGAACTCTTATTC7805659GCCGAAATTGACTACATGCAGAAGAGAGTAAGAAACCATATTATATCCAA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:63500822-63500841
TAAATATGTTTACAGAATGAACTCTTATTC63500822GCCGAAATTGACTACATGCAGAAGAGAGTAAGCAGATATACTACATCTAG
Brassica oleracea var. viridis AG mRNA, complete cds.
KC984300.2:613-632
ATCAGATCCAAGAAGAATGAACTCTTATTC613GCCGAAATTGACTACATGCAGAAGAGATCTGTGCAGGAAGTTGATTTGCA
Brassica rapa genome, scaffold: A01.
LR031571.1:5356341-5356360
ATTTTTTTTTTATAGAACGAACTCTTATTC5356341GCCGAAATTGACTACATGCAGAAGAGAGTAAGAAACCATATTATATCTAC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:63209559-63209578
TAAATATGTTTACAGAATGAACTCTTATTC63209559GCCGAAATTGACTACATGCAGAAGAGAGTAAGCAGATATACTACATCTAG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:7659060-7659079
TATATTTTTGTATAGAATGAACTCTTATTC7659060GCCGAAATTGACTACATGCAGAAGAGAGTAAGAAACCATATTATATCCAA
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:16350095-16350114
TGAATATTTTTACAGAATGAACTCTTATTC16350095GCCGAAATTGACTACATGCAGAAGAAAGTAAGAAGATATGTTACATCTAA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:5380690-5380709
ATTTTTTTTTTATAGAACGAACTCTTATTC5380690GCCGAAATTGACTACATGCAGAAGAGAGTAAGAAACCATATTATATCTAC
Brassica napus (BAG1) mRNA, complete cds.
M99415.1:615-634
ATCCGATCCAAGAAGAACGAACTCTTATTC615GCCGAAATTGACTACATGCAGAAGAGAGAAGTTGATTTGCATAACGATAA
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:35406359-35406378
TTGTACTTTTCATAGAATGAACTCTTATTC35406359GCCGAAATTGACTACATGCAGAAGAGAGTAAGAAACCAAATTATATCTAA
Galeruca laticollis genome assembly, chromosome: 3.
OY998177.1:156726671-156726690
CTGAATTTGTATATTATTTTGTGACGTTAT156726671GCCGAAATTGACTACATGCATTGTAGAATAAATGATTGTTTTAAAATATA

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