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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 15:34:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_22370.
FX733211.1:1621-1640
AGCGCGCGTAGTCGTTGCGTTGCCGCCATA1621TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT
KBrB033O04F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB033O04, genomic survey sequence.
DX035679.1:216-235
AGCGCGCGTAGTCGTTGCGTTGCCGCCATA216TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT
KBrB054M21R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB054M21, genomic survey sequence.
DX051510.1:330-349
AGCGCGCGTAGTCGTTGCGTTGCCGCCATA330TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT
KBrB070H12R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB070H12, genomic survey sequence.
DX063328.1:330-349
AGCGCGCGTAGTCGTTGCGTTGCCGCCATA330TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT
KBrB126A13F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB126A13, genomic survey sequence.
ED533956.1:347-366
AGCGCGCGTAGTCGTTGCGTTGCCGCCATA347TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT
KBrB128H13R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB128H13, genomic survey sequence.
ED535786.1:315-334
AGCGCGCGTAGTCGTTGCGTTGCCGCCATA315TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT
Brassica rapa subsp. pekinensis clone KBrB096A21, complete sequence.
CU695272.1:108786-108805
AGCGCGCGTAGTCGTTGCGTTGCCGCCATA108786TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033O04, complete sequence.
AC189307.2:330-349
AGCGCGCGTAGTCGTTGCGTTGCCGCCATA330TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:25330959-25330978
AGCGCGCGTAGTCGTTGCGTTGCCGCCATA25330959TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT
Brassica napus genome assembly, chromosome: A04.
HG994358.1:19812165-19812184
AGCGCGCGTAGTCGTTGCGTTGCCGCCATA19812165TGGAGATTGTCCTCCGATCACCGACTAAAAAGTTAGATCTTTGGTTTCAT
60ACAB48_UP_012_G08_30SEP2004_052 Brassica napus seed library Brassica napus cDNA 5', mRNA sequence.
EE423173.1:3-22
GG3TGATCGGAGGACAATCTCCATATGGCGGCAACGCACCGACTACGCGCGCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_9314.
FX699428.1:92-111
ATGAAACCAAAGATCTAACTTTTTAGTCGG92TGATCGGAGGACAATCTCCATATGGCGGCAACGCAACGACTACGCGCGCT
Brassica rapa subsp. pekinensis GSS, clone KBrH062A11, end read, primer SP6.
AJ861022.1:530-549
ATGAAACCAAAGATCTAACTTTTTAGTCGG530TGATCGGAGGACAATCTCCATATGGCGGCAACGCAACGACTACGCGCGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGAGATTGTCCTCCGATCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGAGATTGTCCTCCGATCA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.238 | 0.228 | search_plus_done; http://172.18.8.135:50400/match?q=TGGAGATTGTCCTCCGATCA&k=0&no_gap=0&offset=0&limit=50
0.327 | 0.090 | search_minus_done; http://172.18.8.135:50400/match?q=TGATCGGAGGACAATCTCCA&k=0&no_gap=0&offset=0&limit=40
0.330 | 0.002 | cgi_end;

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