GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:02:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus communis genome assembly, chromosome: 14.
OY757081.1:24366524-24366543
TAATACCTCAACCAATCGAGGTGGAAATTG24366524TGGCTTCAGATCTTTCAACTCTACAGTCTCTTCATGTCAAATTTGTGAGG
Magelona johnstoni genome assembly, chromosome: 15.
OZ012698.1:3641630-3641649
ACATAATCCATCTACAGGAAACACATTTAA3641630TGGCTTCAGATCTTTCAACTTTAAAGAAAGTCTGGAACTGCAAATTTTTG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:23339856-23339875
CCTCACAAATTTGACATGGAATTACTACAG23339856AGTTGAAAGATCTGAAGCCATGATTTCCACCTCGATTTCCACCACGGTTG
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:22440192-22440211
CCTCACAAATTTGACATGGAATTACTACAG22440192AGTTGAAAGATCTGAAGCCACGATTTCCACCTCGATTTCCACCACGGTTG
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:22983688-22983707
CCTCACAAATTTGACATGGAATTACTACAG22983688AGTTGAAAGATCTGAAGCCACGATTTCCACCTCGATTTCCACCACGGTTG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:24088783-24088802
CCTCACAAATTTGACATGGAATTACTACAG24088783AGTTGAAAGATCTGAAGCCACGATTTCCACCTCGATTTCCACCACGGTCG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:33146599-33146618
CCTCACAAATTTGACATGGAGTTATTGCAG33146599AGTTGAAAGATCTGAAGCCACGATTTCCACCTCGATTTTCACCATGGTTG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:22265751-22265770
CCTCACAAATTTGACATGGAATTACTACAG22265751AGTTGAAAGATCTGAAGCCACGATTTCCACCTCGATTTCCACCACGGTTG
UNVERIFIED: Malus fusca sequence.
ON000502.1:136959-136978
CCTCACAAATTTGACATGGAGTTACTGCAG136959AGTTGAAAGATCTGAAGCCACGATTTCCACCTCGATTTCCACCACGGTTG
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:23772210-23772229
CCTCACAAATTTGACATGGAATTACTACAG23772210AGTTGAAAGATCTGAAGCCACGATTTCCACCTCGATTTCCACCACGGTTG
Malus domestica genome assembly, chromosome: 10.
OU696686.1:23698554-23698573
CCTCACAAATTTGACATGGAATTACTACAG23698554AGTTGAAAGATCTGAAGCCACGATTTCCACCTCAATTTCCACCACGGTTG
Malus domestica genome assembly, chromosome: 10.
OU696686.1:32922631-32922650
CCTCACAAATTTGACATGGAGTTATTGCAG32922631AGTTGAAAGATCTGAAGCCACGATTTCCACCTCGATTTTCACCATGGTTG
Malus domestica genome assembly, chromosome: 10.
OU744551.1:23831804-23831823
CCTCACAAATTTGACATGGAATTACTACAG23831804AGTTGAAAGATCTGAAGCCACGATTTCCACCTCGATTTCCACCACGGTTG
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:22473965-22473984
CCTCACAAATTTGACATGGAATTACTACAG22473965AGTTGAAAGATCTGAAGCCACGATTTCCACCTCGATTTCCACCACGGTTG
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:21043201-21043220
CCTCACAAATTTGACATGGAGTGAATGCAA21043201AGTTGAAAGATCTGAAGCCACGATTTCCACCTCGATGTCCACCACGATTG
Magelona johnstoni genome assembly, chromosome: 2.
OZ012685.1:26782691-26782710
TTGAAGCATTCATTACAAACACTGTAGCCA26782691AGTTGAAAGATCTGAAGCCAAAAAGCCAGAGATGGAATCACAGGGATACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGCTTCAGATCTTTCAACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGCTTCAGATCTTTCAACT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.090 | 0.081 | search_plus_done; http://172.18.8.135:50400/match?q=TGGCTTCAGATCTTTCAACT&k=0&no_gap=0&offset=0&limit=50
0.112 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=AGTTGAAAGATCTGAAGCCA&k=0&no_gap=0&offset=0&limit=48
0.122 | 0.009 | cgi_end;

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