GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 09:27:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Acipenser ruthenus genome assembly, chromosome: 22.
OV737703.1:30180096-30180115
AAGACCACAGAGCAGCAGAGGGGCTTGGGC30180096TGGGGTTGAAGAAGGTAGCAGTGAGTGATCCAGTTACAATGTGTTATGCA
Acipenser ruthenus genome assembly, chromosome: 22.
OV754630.1:30188346-30188365
AAGACCACAGAGCAGCAGAGGGGCTTGGGC30188346TGGGGTTGAAGAAGGTAGCAGTGAGTGATCCAGTTACAATATGTTATGCA
Mdfr3003a11.y1 Mdfr Malus domestica cDNA clone Mdfr3003a11 5' similar to TR:Q9SNE0 Q9SNE0 ANTHRANILATE N-HYDROXYCINNAMOYL/BENZOYLTRANSFERASE-LIKE PROTEIN, mRNA sequence.
CN995719.2:123-142
TAAGTCACATGGGAAAATTACAGTGTTTTC123TGGGGTTGAAGAAGGTAGCATTGATATTGAAGCTTGTCTTTTGGCTGAGA
Mdfbg8014G16.g1 Apple_EST_Mdfbg Malus hybrid rootstock cDNA 5' similar to ref|NP_201516.1| hydroxycinnamoyl/benzoyltransferase-related [Arabidopsis thaliana] dbj|BAB10949.1| anthranilate N-hydroxycinn
GO517473.1:616-635
TAAGTCACATGGGAAAATTACAGTGTTTTC616TGGGGTTGAAGAAGGTAGCATTGATATTGAAGCTTGTCTTTTGGCTGAGA
Mdfrb3145P18.g1 Apple_EST_Mdfrb Malus domestica cDNA 5' similar to ref|NP_201516.1| hydroxycinnamoyl/benzoyltransferase-related [Arabidopsis thaliana] dbj|BAB10949.1| anthranilate N-hydroxycinnamoyl/b
GO521458.1:228-247
TAAGTCACATGGGAAAATTACAGTGTTTTC228TGGGGTTGAAGAAGGTAGCATTGATATTGAAGCTTGTCTTTTGGCTGAGA
Aeschynomene afraspera mRNA 5-prime sequence from clone ADL0ACA5YM05 (ADL0ACA5YM05CM1).
LO010288.1:267-286
TAAGAATAATGGGAGGATTTGTGTGTTTCC267TGGGGTTGAAGAAGGTAGCATTGATATTGAAGTGTGCTTTCCTTATGATA
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 9.
CP124711.1:126539984-126540003
TAAAAATGAAAATTGAGGTACATAAGAGGT126539984TGGGGTTGAAGAAGGTAGCAGTGGGGGTGGGAGTGTCATGGAAGTGTGGG
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:21335077-21335096
TAAGTCACATGGGAAAATTACAGTGTTTTC21335077TGGGGTTGAAGAAGGTAGCATTGATATTGAAGCTTGTCTTTTGGCTGAGA
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:17184996-17185015
TAAGTCACATGGGAAAATTACAGTGTTTTC17184996TGGGGTTGAAGAAGGTAGCATTGATATTGAAGCTTGTCTTTTGGCTGAGA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:23488735-23488754
TAAGTCACATGGGAAAATTACAGTGTTTTC23488735TGGGGTTGAAGAAGGTAGCATTGATATTGAAGCTTGTCTTTTGGCTGAGA
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141934.1:18327457-18327476
TAAGTCACATGGGAAAATTACAGTGTTTTC18327457TGGGGTTGAAGAAGGTAGCATTGATATTGAAGCTTGTCTTTTGGCTGAGA
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141960.1:17958215-17958234
TAAGTCACATGGGAAAATCACAGTGTTTTC17958215TGGGGTTGAAGAAGGTAGCATTGATATTGAAGCTTGTCTTTTGGCTGAGA
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141977.1:17913030-17913049
TAAGTCACATGGGAAAATTACAGTGTTTTC17913030TGGGGTTGAAGAAGGTAGCATTGATATTGAAGCTTGTCTTTTGGCTGAGA
Icerya purchasi genome assembly, chromosome: 2.
OX731681.1:310835423-310835442
TAATAGCAGTACAGGAAGATGATCGAAATA310835423TGGGGTTGAAGAAGGTAGCATTAGGATACCCCAAAATTAAAATCGATAAT
Mdfbg8014G16_e4518.g1 Apple_EST_Mdfbg Malus hybrid rootstock cDNA 5' similar to ref|NP_201516.1| hydroxycinnamoyl/benzoyltransferase-related [Arabidopsis thaliana] dbj|BAB10949.1| anthranilate N-hydro
GO547466.1:249-268
TCTCAGCCAAAAGACAAGCTTCAATATCAA249TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
Pyrus pyrifolia mRNA, clone: NLE2_34_52, 5' end sequence, expressed in leaf.
HX769505.1:180-199
TCTCAGCCAAAAGACAAGCTTCAATATCAA180TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
TSA: Pyrus pyrifolia mRNA, contig: contig_11unknown.
FX408207.1:185-204
TCTCAGCCAAAAGACAAGCTTCAATATCAA185TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
TSA: Pyrus x bretschneideri Unigene56070_XinShao mRNA sequence.
JR645321.1:164-183
TCTCAGCCAAAAGACAAGCTTCAATATCAA164TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
Solanum pinnatisectum cultivar CGN17745 chromosome 3.
CP047566.1:59907265-59907284
TAGTGTTACTTAAAAATAAAATCTAGGGAT59907265TGCTACCTTCTTCAACCCCACCCCCTTAATAGAGGAAAAACAAAATTTAA
Solanum tuberosum cultivar Solyntus chromosome 3.
CP055236.1:61356675-61356694
TAGTGTTACTTAAAAATAAAATCTAGGGAT61356675TGCTACCTTCTTCAACCCCACCCCCTTAATAGAGGAAAAACAAAATTTAA
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:14746612-14746631
TCTCAGCCAAAAGACAAGCTTCAATATCAA14746612TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143365.1:12374044-12374063
TCTCAGCCAAAAGACAAGCTTCAATATCAA12374044TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:14312026-14312045
TCTCAGCCAAAAGACAAGCTTCAATATCAA14312026TGCTACCTTCTTCAACCCCAGAAAACACTGTAAGTTTCCCATGTGACTTA
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143382.1:12039003-12039022
TCTCAGCCAAAAGACAAGCTTCAATATCAA12039003TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:14453988-14454007
TCTCAGCCAAAAGACAAGCTTCAATATCAA14453988TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
Malus sylvestris genome assembly, chromosome: 8.
OU696510.1:12381382-12381401
TCTCAGCCAAAAGACAAGCTTCAATATCAA12381382TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
Malus domestica genome assembly, chromosome: 8.
OU696684.1:12182869-12182888
TCTCAGCCAAAAGACAAGCTTCAATATCAA12182869TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
Malus domestica genome assembly, chromosome: 2.
OU744543.1:14725201-14725220
TCTCAGCCAAAAGACAAGCTTCAATATCAA14725201TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
Malus domestica genome assembly, chromosome: 8.
OU744549.1:12377952-12377971
TCTCAGCCAAAAGACAAGCTTCAATATCAA12377952TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
Malus domestica genome assembly, chromosome: 8.
OU744960.1:12326967-12326986
TCTCAGCCAAAAGACAAGCTTCAATATCAA12326967TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
Malus domestica genome assembly, chromosome: 8.
OU744998.1:12468403-12468422
TCTCAGCCAAAAGACAAGCTTCAATATCAA12468403TGCTACCTTCTTCAACCCCAGAAAACACTGTAATTTTCCCATGTGACTTA
Magelona johnstoni genome assembly, chromosome: 2.
OZ012685.1:44545821-44545840
CACTATCTTTGAAAGGAAATGGCATGCGAT44545821TGCTACCTTCTTCAACCCCAAATAGTCATCTCATATTTTATATATACAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGGGTTGAAGAAGGTAGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGGGTTGAAGAAGGTAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.405 | 0.397 | search_plus_done; http://172.18.8.135:50400/match?q=TGGGGTTGAAGAAGGTAGCA&k=0&no_gap=0&offset=0&limit=50
0.625 | 0.220 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTACCTTCTTCAACCCCA&k=0&no_gap=0&offset=0&limit=36
0.637 | 0.012 | cgi_end;

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