GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-16 03:31:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Trifolium repens mRNA, clone: WCC39k05_077, unspecified EST.
FY467967.1:243-262
CGCCGCCTCGCCGGAGCTAAACGTTTCCGA243TGGGTCCGTGACATTATTGAACATCAGAAGAATTACTCAGATATTTCCAA
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:45809901-45809920
CGCCGCCTCGCCGGAGCTAAACGTTTCCGA45809901TGGGTCCGTGACATTATTGAACATCAGAAGAATTACTCAGATATTTCCAA
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:42585995-42586014
CGCCGCCTCGCCGGAGCTAAACGTTTCCGA42585995TGGGTCCGTGACATTATTGAACATCAGAAGAATTACTCAGATATTTCCAA
Trifolium subterraneum genome assembly, chromosome: 1.
OX637461.1:15917361-15917380
TTGGAAATATCTGAGTAATTCTTCTGATGT15917361TCAATAATGTCACGGACCCATCGGAAACGTTTAGCTCCGGCGAGGCGGCG
Lathyrus aphaca genome assembly, chromosome: 3.
OZ014521.1:109403782-109403801
TTGGCTATGTCAGTGTAATTCTTCTGGTGT109403782TCAATAATGTCACGGACCCATCGGAAGCGCTTAGCTCTGGCGAGGCGGCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGGTCCGTGACATTATTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGGTCCGTGACATTATTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.186 | 0.177 | search_plus_done; http://172.18.8.135:50400/match?q=TGGGTCCGTGACATTATTGA&k=0&no_gap=0&offset=0&limit=50
0.203 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=TCAATAATGTCACGGACCCA&k=0&no_gap=0&offset=0&limit=47
0.205 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).