GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 23:33:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Phosphuga atrata genome assembly, chromosome: 4.
OX155895.1:61689487-61689506
TTGGCTATTGGTCATAAAAACTGTAGTATT61689487TGGTCCTAGAAATGAAAGTAAACTTGAAAAGAAAAAAAATTAACTTCATT
GQ03206.B7_F15 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03206_F15 5', mRNA sequence.
EX362769.1:215-234
GTTGGGGTGCTGAAGCAATGGAAATGATGC215TACTTTCATTTCTAGGACCAGCAGTTCATTCTGAGTGGGGAGTGTCTCCT
GQ03207.B7_M18 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03207_M18 5', mRNA sequence.
EX363648.1:210-229
GTTGGGGTGCTGAAGCAATGGAAATGATGC210TACTTTCATTTCTAGGACCAGCAGTTCATTCTGAGTGGGGAGTGTCTCCT
GQ03214.B7_A13 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03214_A13 5', mRNA sequence.
EX368430.1:224-243
GTTGGGGTGCTGAGGCAATGGAAATGATGC224TACTTTCATTTCTAGGACCAGCAGTTCATTCTGAGTGGGGAGTGTCTCCT
GQ03701.B7_K21 GQ037 - Shoot tip - Dormant Picea glauca cDNA clone GQ03701_K21 5', mRNA sequence.
EX415166.1:257-276
GTTGGGGTGCTGAAGCAATGGAAATGATGC257TACTTTCATTTCTAGGACCAGCAGTTCATTCTGAGTGGGGAGTGTCTCCT
GQ03710.B7_F18 GQ037 - Shoot tip - Dormant Picea glauca cDNA clone GQ03710_F18 5', mRNA sequence.
EX418387.1:213-232
GTTGGGGTGCTGAAGCAATGGAAATGATGC213TACTTTCATTTCTAGGACCAGCAGTTCATTCTGAGTGGGGAGTGTCTCCT
Picea glauca clone GQ03207_M18 mRNA sequence.
BT109383.1:210-229
GTTGGGGTGCTGAAGCAATGGAAATGATGC210TACTTTCATTTCTAGGACCAGCAGTTCATTCTGAGTGGGGAGTGTCTCCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGTCCTAGAAATGAAAGTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGTCCTAGAAATGAAAGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.086 | search_plus_done; http://172.18.8.135:50400/match?q=TGGTCCTAGAAATGAAAGTA&k=0&no_gap=0&offset=0&limit=50
0.399 | 0.305 | search_minus_done; http://172.18.8.135:50400/match?q=TACTTTCATTTCTAGGACCA&k=0&no_gap=0&offset=0&limit=49
0.403 | 0.004 | cgi_end;

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