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2025-04-16 14:03:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sequence 1697 from patent US 10766935.
MV645092.1:470-493

GAGGAGCGCTTCAAGACCGGCAAGAACCGG470TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

Sequence 1702 from patent US 10766935.
MV645097.1:451-474

GAGGAGCGCTTCAAGACCGGCAAGAACCGG451TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACGGTTCATGAGATTGA

Sequence 1762 from patent US 10766935.
MV645157.1:526-549

GAGGAGAGGTTCAAGACTGGGAAGAACAGG526TGGTTCTTCACTAAGCTCCGCTTCTGAAGAAGTCATTTGATCTCCTTTTTGTGG

Sequence 1697 from patent US 11566053.
OS268571.1:470-493

GAGGAGCGCTTCAAGACCGGCAAGAACCGG470TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

Sequence 1702 from patent US 11566053.
OS268576.1:451-474

GAGGAGCGCTTCAAGACCGGCAAGAACCGG451TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACGGTTCATGAGATTGA

Sequence 1762 from patent US 11566053.
OS268636.1:526-549

GAGGAGAGGTTCAAGACTGGGAAGAACAGG526TGGTTCTTCACTAAGCTCCGCTTCTGAAGAAGTCATTTGATCTCCTTTTTGTGG

atr02-4ms2-d05 Atr02 Amborella trichopoda cDNA clone atr02-4ms2-d05 5', mRNA sequence.
CK758133.1:269-292

GAGGAGAGGTTCAAGACTGGGAAGAACAGG269TGGTTCTTCACTAAGCTCCGCTTCTGAAGAAGTCATTTGATCTCCTTTTTGTGG

atr02-3ms1-g12 Atr02 Amborella trichopoda cDNA clone atr02-3ms1-g12 5', mRNA sequence.
CK760385.1:264-287

GAGGAGAGGTTCAAGACTGGGAAGAACAGG264TGGTTCTTCACTAAGCTCCGCTTCTGAAGAAGTCATTTGATCTCCTTTTTGTGG

EoEST0927 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-920 5' similar to ribosomal protein L27, mRNA sequence.
EL608911.1:350-373

GAGGAGCGCTTCAAGACCGGCAAGAACCGG350TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

OPYF00774 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 189-E9-T3.seq, mRNA sequence.
EL681684.1:430-453

GAGGAGCGCTTCAAGACCGGCAAGAACCGG430TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

OPMF00660 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 122-H11-T3.seq, mRNA sequence.
EL684422.1:433-456

GAGGAGCGCTTCAAGACCGGCAAGAACCGG433TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

OPMF01352 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 5-B11-T3.seq, mRNA sequence.
EL685112.1:411-434

GAGGAGCGCTTCAAGACCGGCAAGAACCGG411TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

OPSC00738 Elaeis guineensis Suspension cell cultures Elaeis guineensis cDNA clone 188-G7-T3.seq, mRNA sequence.
EL688973.1:409-432

GAGGAGCGCTTCAAGACCGGCAAGAACCGG409TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

OPR00318 Elaeis guineensis root Elaeis guineensis cDNA clone PLATE205-D2-T3.seq, mRNA sequence.
EL690288.1:448-471

GAGGAGCGCTTCAAGACCGGCAAGAACCGG448TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

OPR00694 Elaeis guineensis root Elaeis guineensis cDNA clone PLATE210-F11-T3.seq, mRNA sequence.
EL690663.1:168-191

GAGGAGCGCTTCAAGACCGGCAAGAACCGG168TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

OPR02830 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_680.seq, mRNA sequence.
EL692789.1:434-457

GAGGAGCGCTTCAAGACCGGCAAGAACCGG434TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

OPR03316 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_A2561.seq, mRNA sequence.
EL693269.1:334-357

GAGGAGCGCTTCAAGACCGGCAAGAACCGG334TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

OPR03369 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_A2640A.seq, mRNA sequence.
EL693321.1:471-494

GAGGAGCGCTTCAAGACCGGCAAGAACCGG471TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

OPR03370 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_A2640B.seq, mRNA sequence.
EL693322.1:470-493

GAGGAGCGCTTCAAGACCGGCAAGAACCGG470TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

EoEST1065 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-1070 5' similar to ribosomal protein L27, mRNA sequence.
EL930236.1:148-171

GAGGAGCGCTTCAAGACCGGCAAGAACCGG148TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

pOP-CNI02080_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNI02080 5', mRNA sequence.
EY403598.1:197-220

GAGGAGCGCTTCAAGACCGGCAAGAACCGG197TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

pOP-EO02263_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO02263 5', mRNA sequence.
EY411114.1:428-451

TAGGAGCGCTTCAAGACCGGCAAGAACCGG428TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

pOP-EO06500_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO06500 5', mRNA sequence.
EY411795.1:440-463

GAGGAGCGCTTCAAGACCGGCAAGAACCGG440TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

pOP-EO05011_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO05011 5', mRNA sequence.
EY412983.1:440-463

GAGGAGCGCTTCAAGACCGGCAAGAACCGG440TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

Atr01b_8_E10_C010.g1 FGP Male Amborella trichopoda Amborella trichopoda cDNA clone 122KJj_J20 5', mRNA sequence.
FD426118.1:401-424

GAGGAGAGGTTCAAGACTGGGAAGAACAGG401TGGTTCTTCACTAAGCTCCGCTTCTGAAGAAGTCATTTGATCTCCTTTTTGTGG

Atr02b_20_C09_C011.g1 FGP Female Amborella trichopoda Amborella trichopoda cDNA clone 122CUZ_E18 5', mRNA sequence.
FD435766.1:206-229

GAGGAGAGGTTCAAGACTGGGAAGAACAGG206TGGTTCTTCACTAAGCTCCGCTTCTGAAGAAGTCATTTGATCTCCTTTTTGTGG

Atr02b_36_C02_C011.g1 FGP Female Amborella trichopoda Amborella trichopoda cDNA clone 122D8B_E04 5', mRNA sequence.
FD436490.1:426-449

GAGGAGAGGTTCAAGACTGGGAAGAACAGG426TGGTTCTTCACTAAGCTCCGCTTCTGAAGAAGTCATTTGATCTCCTTTTTGTGG

Atr02b_135_E08_C011.g1 FGP Female Amborella trichopoda Amborella trichopoda cDNA clone 122CYH_J15 5', mRNA sequence.
FD442164.1:152-175

GAGGAGAGGTTCAAGACTGGGAAGAACAGG152TGGTTCTTCACTAAGCTCCGCTTCTGAAGAAGTCATTTGATCTCCTTTTTGTGG

Atr02b_135_H02_C011.g1 FGP Female Amborella trichopoda Amborella trichopoda cDNA clone 122CYH_P03 5', mRNA sequence.
FD442180.1:385-408

AGGAGAGGTTCAAGAACTGGGAAGAACAGG385TGGTTCTTCACTAAGCTCCGCTTCTGAAGAAGTCATTTGATCTCCTTTTTGTGG

Atr02b_141_B03_C011.g1 FGP Female Amborella trichopoda Amborella trichopoda cDNA clone 122CSX_C05 5', mRNA sequence.
FD442537.1:394-417

GAGGAGAGGTTCAAGACTGGGAAGAACAGG394TGGTTCTTCACTAAGCTCCGCTTCTGAAGAAGTCATTTGATCTCCTTTTTGTGG

Elaeis guineensis EST, clone (6lib)_isotig14029.
LM619263.1:439-462

GAGGAGCGCTTCAAGACCGGCAAGAACCGG439TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

TSA: Elaeis guineensis EgEfMPOB00099 60S ribosomal protein L27 mRNA, complete cds, mRNA sequence.
EU284914.1:382-405

GAGGAGCGCTTCAAGACCGGCAAGAACCGG382TGGTTCTTCACTAAGCTCCGCTTCTAG

TSA: Elaeis guineensis isotig11060.Elguifruit mRNA sequence.
JO098287.1:438-461

GAGGAGCGCTTCAAGACCGGCAAGAACCGG438TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

TSA: Rhynchophorus ferrugineus contig06214.Rhfeelpa mRNA sequence.
JR473677.1:452-475

GAGGAGCGCTTCAAGACCGGCAAGAACCGG452TGGTTCTTCACTAAGCTCCGCTTCTAGACGCTTCTAGAGAGAGGTATACAGTTC

Cocos nucifera beta-ketoacyl ACP synthase isoform 2 mRNA, 3' UTR.
EU143667.1:76-99

GAGGAGCGCTTCAAGACCGGCAAGAACCGG76TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

Elaeis guineensis 60S ribosomal protein l27 (RPL27) mRNA, complete cds.
KC146064.1:447-470

GAGGAGCGCTTCAAGACCGGCAAGAACCGG447TGGTTCTTCACTAAGCTCCGCTTCTAGATAAAGGTATACAGTTCATGAGATTGA

Strongyloides venezuelensis genome assembly, scaffold: SVE_scaffold0000004.
LM524972.1:794038-794061

GAGGATAAATACAAGACTGGAAAGAACAAA794038TGGTTCTTCACTAAGCTCCGCTTCTAAACGTACTGTTCTTTTTTGTAACTCTGT

Oscheius sp. JU1382 genome assembly, chromosome: I.
OW051475.1:5136694-5136717

TTTTATTGATCCAACAAAATCAACAACTTA5136694GAAGCGGAGCTTAGTGAAGAACCACTTGTTCTTTCCGGTCTTGTAGCGTTCCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
1.792 | 1.783 | search_plus_done; http://172.18.8.135:50400/match?q=TGGTTCTTCACTAAGCTCCGCTTC&k=0&no_gap=0&offset=0&limit=50
1.846 | 0.055 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGCGGAGCTTAGTGAAGAACCA&k=0&no_gap=0&offset=0&limit=13
1.847 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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