GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 13:28:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 3849 from Patent EP2519097.
JB351437.1:299-320
GGGTTTTGGTATTAGATCAGCAATTGTCTT299TGGTTTCTCCGTGTGAATCTTCTAAGCAGATCTGATCTTGAGGGTGATGCTA
Sequence 3849 from patent US 9493785.
KH363348.1:299-320
GGGTTTTGGTATTAGATCAGCAATTGTCTT299TGGTTTCTCCGTGTGAATCTTCTAAGCAGATCTGATCTTGAGGGTGATGCTA
Sequence 3849 from Patent EP3056569.
LQ606998.1:299-320
GGGTTTTGGTATTAGATCAGCAATTGTCTT299TGGTTTCTCCGTGTGAATCTTCTAAGCAGATCTGATCTTGAGGGTGATGCTA
Sequence 3849 from patent US 10351873.
MO208570.1:299-320
GGGTTTTGGTATTAGATCAGCAATTGTCTT299TGGTTTCTCCGTGTGAATCTTCTAAGCAGATCTGATCTTGAGGGTGATGCTA
RS1AL07TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW715126.1:299-320
GGGTTTTGGTATTAGATCAGCAATTGTCTT299TGGTTTCTCCGTGTGAATCTTCTAAGCAGATCTGATCTTGAGGGTGATGCTA
BR087825 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-046E03 5', mRNA sequence.
EX101535.1:289-310
GGGTTTTATTATTAGATCAGCAATTGTCTT289TGGTTTCTCCGTGTGAATCTTCTAAGCAGATCTGATCTTGGGAGTGATGTTA
BR114564 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-05B03 5', mRNA sequence.
EX130734.1:271-292
GGGTTTTATTATTAGATCAGCAATTGTCTT271TGGTTTCTCCGTGTGAATCTTCTAAGCAGATCTGATCTTGGGAGTGATGTTA
RS1D327TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY929771.1:299-320
GGGTTTTGGTATTAGATCAGCAATTGTCTT299TGGTTTCTCCGTGTGAATCTTCTAAGCAGATCTGATCTTGAGGGTGATGCTA
RS2E920TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY940638.1:291-312
GGGTTTTGGTATTAGATCAGCAATTGTCTT291TGGTTTCTCCGTGTGAATCTTCTAAGCAGATCTGATCTTGAGGGTGATGCTA
RS2G739TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD946097.1:83-104
GGGCTTTGGTATTAGATCAGCAATTGTCTT83TGGTTTCTCCGTGTGAATCTTCTAAGCAGATCTGATCTTGAGGGTGATGCTA
RS1AL07JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW719809.1:457-478
TAGCATCACCCTCAAGATCAGATCTGCTTA457GAAGATTCACACGGAGAAACCAAAGACAATTGCTGATCTAATACCAAAACCC
RS1D327JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EY926121.1:437-458
TAGCATCACCCTCAAGATCAGATCTGCTTA437GAAGATTCACACGGAGAAACCAAAGACAATTGCTGATCTAATACCAAAACCC
RS2E920JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY936367.1:577-598
TAGCATCACCCTCAAGATCAGATCTGCTTA577GAAGATTCACACGGAGAAACCAAAGACAATTGCTGATCTAATACCAAAACCC
RS2G739JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD942284.1:480-501
TAGCATCACCCTCAAGATCAGATCTGCTTA480GAAGATTCACACGGAGAAACCAAAGACAATTGCTGATCTAATACCAAAGCCC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_13357.
FX723705.1:484-505
TAACATCACTCCCAAGATCAGATCTGCTTA484GAAGATTCACACGGAGAAACCAAAGACAATTGCTGATCTAATAATAAAACCC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048K11, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189374.2:90877-90898
TAACATCACTCCCAAGATCAGATCTGCTTA90877GAAGATTCACACGGAGAAACCAAAGACAATTGCTGATCTAATAATAAAACCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGGTTTCTCCGTGTGAATCTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGGTTTCTCCGTGTGAATCTTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.582 | 0.573 | search_plus_done; http://172.18.8.135:50400/match?q=TGGTTTCTCCGTGTGAATCTTC&k=0&no_gap=0&offset=0&limit=50
0.899 | 0.317 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGATTCACACGGAGAAACCA&k=0&no_gap=0&offset=0&limit=40
0.903 | 0.004 | cgi_end;

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