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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 02:34:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

UCRPT01_0006E02_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0006E02, mRNA sequence.
CV705014.1:95-114
TATTTTCTTATGAAAATCACGAAGGAAAGC95CGCGGATCATCTAGCATACAATAGCTCCCGCTTCTGTGTTAATTGCTTTT
UCRPT01_0009H17_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0009H17, mRNA sequence.
CV707196.1:367-386
TATTTTCTTATGAAAATCACGAAGGAAAGC367CGCGGATCATCTAGCATACAATAGCTCCCGCTTCTGTGTTAATTGCTTTT
UCRPT01_0012G01_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0012G01, mRNA sequence.
CV709115.1:226-245
TATTTTCTTATGAAAATCACGAAGGAAAGC226CGCGGATCATCTAGCATACAATAGCTCCCGCTTCTGTGTTAATTGCTTTT
UCRPT01_0013I14_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0013I14, mRNA sequence.
CV709874.1:252-271
TATTTTCTTATGAAAATCACGAAGGAAAGC252CGCGGATCATCTAGCATACAATAGCTCCCGCTTCTGTGTTAATTGCTTTT
USDA-FP/ARO_14433 Star Ruby grapefruit hot water-treated flavedo Citrus x paradisi cDNA clone Hw-14_B08 5', mRNA sequence.
DN958603.1:264-283
TATTTTCTTATGAAAATCACGAAGGAAAGC264CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA
IC0AAA58CE10RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY283129.1:521-540
TATTTTCTTATGAAAATCACGAAGGAAAGC521CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA
CS00-C3-702-056-A08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY715567.1:407-426
TATTTTCTTATGAAAATCACGAAGGAAAGC407CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA
CS00-C3-704-057-F07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY732235.1:260-279
TATTTTCTTATGAAAATCACGAAGGAAAGC260CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA
CS00-C3-704-063-G07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY732560.1:261-280
TATTTTCTTATGAAAATCACGAAGGAAAGC261CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA
CS00-C3-705-076-G07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY740777.1:332-351
TATTTTCTTATGAAAATCACGAAGGAAAGC332CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA
CS12-C1-001-005-C10-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
EY753650.1:512-531
TATTTTCTTATGAAAATCACGAAGGAAAGC512CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA
CS12-C1-001-012-D07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
EY754244.1:496-515
TATTTTCTTATGAAAATCACGAAGGAAAGC496CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA
CS12-C1-001-012-D12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
EY754249.1:496-515
TATTTTCTTATGAAAATCACGAAGGAAAGC496CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA
CR05-C1-103-005-H08-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY776020.1:498-517
TATTTTCTTATGAAAATCACGAAGGAAAGC498CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA
CR05-C3-702-049-C06-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA, mRNA sequence.
EY804632.1:21-40
ATGAAATCACGAAGGAAAGC21CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA
CG32-C1-003-080-F03-CT.F Mexican lime leaf, greenhouse plant Citrus aurantiifolia cDNA, mRNA sequence.
EY857074.1:293-312
TATTTTCTTATGAAAATCACGAAGGAAAGC293CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA
IC0AAA58CE10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58CE10, mRNA sequence.
FC882655.1:517-536
TATTTTCTTATGAAAATCACGAAGGAAAGC517CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA
Citrus sinensis genome assembly, chromosome: 9.
OY754326.1:7815188-7815207
TATTTTCTTATGAAAATCACGAAGGAAAGC7815188CGCGGATCATCTAGCATACAATAGCTCTCGCTTCTGTGTTATTGCTTTTA

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