GGGenome | Results

2025-04-14 08:21:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

OPVM01603 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone OPN0XX_C55-1.seq, mRNA sequence.
EL687973.1:448-471

AGGAGAGGATGGAATAGTTTCTCCAAGATT448GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC

EoEST1230 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-1250 5' similar to Unknown protein [Note, similar to Oryza sativa (japonica cultivar-group) clone Os01g0589500, ge
EL930396.1:435-458

AGGAGAGGATGGAATAGTTTCTCCAAGATT435GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC

EoEST2496 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-2667 5' similar to unknown protein, mRNA sequence.
ES370685.1:449-472

AGGAGAGGATGGAATAGTTTCTCCAAGATT449GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC

EoEST2924 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-3152 5' similar to unknown protein, mRNA sequence.
ES414518.1:449-472

AGGAGAGGATGGAATAGTTTCTCCAAGATT449GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC

pOP-EAP02319_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP02319 5', mRNA sequence.
EY405522.1:263-286

AGGAGAGGATGGAATAGTTTCTCCAAGATT263GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC

pOP-EO04659_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO04659 5', mRNA sequence.
EY409448.1:341-364

AGGAGAGGATGGAATAGTTTCTCCAAGATT341GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC

TSA: Elaeis guineensis EgEfMPOB00191 holocarboxylase synthetase mRNA, complete cds, mRNA sequence.
EU285005.1:288-311

AGGAGAGGATGGAATAGTTTCTCCAAGATT288GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC

TSA: Elaeis guineensis isotig08760.Elguifruit mRNA sequence.
JO095990.1:441-464

AGGAGAGGATGGAATAGTTTCTCCAAGATT441GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC

Elaeis guineensis clone estEgSNP12 holocarboxylase synthetase (HCS) mRNA, complete cds.
JX438711.1:431-454

AGGAGAGGATGGAATAGTTTCTCCAAGATT431GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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BED format: Link | Download
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JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.116 | 0.107 | search_plus_done; http://172.18.8.135:50400/match?q=TGTGGATGCTGGTGTTGGAATTGC&k=0&no_gap=0&offset=0&limit=50
0.512 | 0.395 | search_minus_done; http://172.18.8.135:50400/match?q=GCAATTCCAACACCAGCATCCACA&k=0&no_gap=0&offset=0&limit=50
0.519 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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