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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 03:22:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BN15.001M19F011204 BN15 Brassica napus cDNA clone BN15001M19, mRNA sequence.
CD813184.1:512-533
TAAAGCTACATTCGAGGATGTGGCGGCTCG512TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGCCCATTTGGT
BN15.020N08F020212 BN15 Brassica napus cDNA clone BN15020N08, mRNA sequence.
CD813738.1:435-456
TAAAGCCACATTCGAGGATGTGGCGGCTCG435TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGCCCATTTGGT
Brassica oleracea var. viridis mRNA, clone: KALE-009J13, 5' end sequence.
DK459223.1:439-460
TAAAGCTACATTCGAGGATGTGGCGGCTCG439TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGCCCATTTGGT
BNSCS2CT_UP_270_B12_03MAY2007_094 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV035423.1:417-438
TAAAGCTACATTCGAGGATGTGGCGGCTCG417TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGCCCATTTGGT
0104149 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV202996.1:483-504
TAAAGCTACATTCGAGGATGTGGCGGCTCG483TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTTTGTTTTGT
RR2AO47TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV536921.1:362-383
CAAAGCCAACTTCGAGGATGTCGCCACTCG362TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RR2AO63TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV536936.1:351-372
CAAAGCCAACTTCGAGGATGTGGCGGCTCG351TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGT
RR1CE79TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX748698.1:372-393
CAAAGCCAACTTCGAGGATGTGGCCACTCG372TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RR2BX27TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX755145.1:356-377
CAAAGCCAACTTCGAGGATGTGGCGGCTCG356TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGT
RR2CR65TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX757731.1:321-342
CAAAGCCAACTTCGAGGATGTGGCGGCTCG321TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGT
RR4C615TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX771628.1:381-402
CAAAGTCAACTTCGAGGATGTGGCCACTCG381TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RS1CT07TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX890441.1:369-390
CAAAACCAACTTCGAGGATGTGGCCACTCG369TGTTTCCGACTGTAGCTCTGCTAAACGCGGTGGCGATCTAGGTCCATTTGGT
RS2BI48TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX894356.1:360-381
CAAAGCCAACTTCGAGGATGTGGCCACTCG360TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RS3BR17TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX903000.1:361-382
CAAAACCAACTTCGAGGATGTGGCCACTCG361TGTTTCCGACTGTAGCTCTGCTAAACGCGGTGGCGATCTAGGTCCATTTGGT
RS3CK20TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX905422.1:373-394
CAAAGCCAACTTCGAGGATGTGGCCACTCG373TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGATCCATTTGGG
RS3CL31TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX905511.1:250-271
CAAAGCCAACTTCGAGGATGTGGCCACTCG250TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RR4D889TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY921860.1:378-399
CAAAGCCAACTTCGAGGATGTGGCCACTCG378TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RR4DC79TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY922199.1:380-401
CAAAGCCAACTTCGAGGATGTGGCCACTCG380TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RS1E008TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY932672.1:373-394
CAAAGCCAACTTCGAGGATGTGGCCACTCG373TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RS3CZ95TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EY946091.1:361-382
CAAAACCAACTTCGAGGATGTGGCCACTCG361TGTTTCCGACTGTAGCTCTGCTAAACGCGGTGGCGATCTAGGTCCATTTGGT
RS3DS48TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EY948647.1:250-271
CAAAGCCAACTTCGAGGATGTGGCCACTCG250TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RR1FT27TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD536354.1:380-401
CAAAGCCAACTTCGAGGATGTGGCCACTCG380TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RR4EU21TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD557228.1:374-395
CAAAGCCAACTTCGAGGATGTGGCCACTCG374TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RR4EZ20TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD557650.1:380-401
CAAAGCCAACTTCGAGGATGTGGCCACTCG380TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RR4F561TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD558200.1:380-401
CAAAGCCTACTTCGAGGATGTGGCCACTCG380TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RR4FB16TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD558698.1:294-315
CAAAGCCAACTTCGAGGATGTGGCCACTCG294TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RS1F890TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD563260.1:371-392
CAAAACCAACTTCGAGGATGTGGCCACTCG371TGTTTCCGACTGTAGCTCTGCTAAACGCGGTGGCGATCTAGGTCCATTTGGT
RS3FF03TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD579601.1:358-379
CAAAGCCGACTTCGAGGATGTGGCCACTCG358TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RS1FV93TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD937863.1:373-394
CAAAGCCAACTTCGAGGATGTGGCCACTCG373TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RS1H687TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD941937.1:371-392
CAAAACCAACTTCGAGGATGTGGCCACTCG371TGTTTCCGACTGTAGCTCTGCTAAACGCGGTGGCGATCTAGGTCCATTTGGT
RS2GD04TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD946583.1:358-379
CAAAACCAACTTCGAGGATGTGGCCACTCG358TGTTTCCGACTGTAGCTCTGCTAAACGCGGTGGCGATCTAGGTCCATTTGGT
RS3FV48TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD954275.1:361-382
CAAAACCAACTTCGAGGATGTGGCCACTCG361TGTTTCCGACTGTAGCTCTGCTAAACGCGGTGGCGATCTAGGTCCATTTGGT
RR1GH62TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD963655.1:381-402
CAAAGCCAACTTCGAGGATGTGGCCACTCA381TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RR1H427TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD965674.1:378-399
CAAAGCCAACTTCGAGGATGTGGCCACTCG378TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RR3GQ23TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD980577.1:89-110
CAAAGCCAACTTCGAGGATGTCGCCACTCG89TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RR3GR56TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD980678.1:372-393
CAAAGCCAACTTCGAGGATGTCGCCACTCG372TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
RR4H837TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD990188.1:378-399
CAAAGCCAACTTCGAGGATGTGGCCACTCG378TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
Raphanus sativus mRNA, clone: RSCR17F06, 5' end sequence.
FY445055.1:337-358
CAAAGCCAACTTCGAGGATGTGGCCACTCG337TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
Raphanus sativus mRNA, clone: RSCS14C05, 5' end sequence.
FY450774.1:357-378
CAAAGCCAACTTCGAGGATGTGGCCACTCG357TGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGG
0104068 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV202915.1:245-266
ACAAAACAAACCTAGATCGCCGCCGCGTTT245AGCAGAGCTACAGTCGGAAACACGAGCCGCCACATCCTCGAATGTAGCTTTA
RR2AO63JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV541279.1:386-407
ACCAAATGGACCTAGATCGCCGCCGCGTTT386AGCAGAGCTACAGTCGGAAACACGAGCCGCCACATCCTCGAAGTTGGCTTTG
RR2BX27JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX759301.1:302-323
ACCAAATGGACCTAGATCGCCGCCGCGTTT302AGCAGAGCTACAGTCGGAAACACGAGCCGCCACATCCTCGAAGTTGGCTTTG
RR3C729JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX767788.1:395-416
CCAAAATGGACCTAGATCGCCGCCGCGTTT395AGCAGAGCTACAGTCGGAAACACGAGTGGCGACATCCTCGAAGTTGGCTTTG
RS1CT07JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX893954.1:403-424
ACCAAATGGACCTAGATCGCCACCGCGTTT403AGCAGAGCTACAGTCGGAAACACGAGTGGCCACATCCTCGAAGTTGGTTTTG
RS3BR17JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EX907150.1:379-400
ACCAAATGGACCTAGATCGCCACCGCGTTT379AGCAGAGCTACAGTCGGAAACACGAGTGGCCACATCCTCGAAGTTGGTTTTG
RR4D889JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY917927.1:400-421
CCCAAATGGACCTAGATCGCCGCCGCGTTT400AGCAGAGCTACAGTCGGAAACACGAGTGGCCACATCCTCGAAGTTGGCTTTG
RS3CZ95JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EY942254.1:379-400
ACCAAATGGACCTAGATCGCCACCGCGTTT379AGCAGAGCTACAGTCGGAAACACGAGTGGCCACATCCTCGAAGTTGGTTTTG
RR1FT27JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD531842.1:287-308
CCCAAATGGACCTAGATCGCCGCCGCGTTT287AGCAGAGCTACAGTCGGAAACACGAGTGGCCACATCCTCGAAGTTGGCTTTG
RR4EZ20JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD553714.1:402-423
CCCAAATGGACCTAGATCGCCGCCGCGTTT402AGCAGAGCTACAGTCGGAAACACGAGTGGCCACATCCTCGAAGTTGGCTTTG
RR4F561JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD554146.1:220-241
CCCAAATGGACCTAGATCGCCGCCGCGTTT220AGCAGAGCTACAGTCGGAAACACGAGTGGCCACATCCTCGAAGTAGGCTTTG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_13908.
FX669114.1:383-404
CCCAAATGGACCTAGATCGCCGCCGCGTTT383AGCAGAGCTACAGTCGGAAACACGAGTGGCCACATCCTCGAAGTTGGCTTTG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_13520.
FX774283.1:382-403
CCCAAATGGACCTAGATCGCCGCCGCGTTT382AGCAGAGCTACAGTCGGAAACACGAGTGGCCACATCCTCGAAGTTGGCTTTG
TSA: Raphanus sativus RS18315 mRNA sequence.
JT802862.1:429-450
CCCAAATGGACCTAGATCGCCGCCGCGTTT429AGCAGAGCTACAGTCGGAAACACGAGTGGCCACATCCTCGAAGTTGGCTTTG
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:24188441-24188462
ACAAAACAAACCTAGATCGCCGCCGCGTTT24188441AGCAGAGCTACAGTCGGAAACACGAGCCGCCACATCCTCGAATGTAGCTTTA
Brassica napus genome assembly, chromosome: C06.
HG994370.1:17930155-17930176
ACAAAACAAACCTAGATCGCCGCCGCGTTT17930155AGCAGAGCTACAGTCGGAAACACGAGCCGCCACATCCTCGAATGTAGCTTTA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:14750698-14750719
ACAAAACAAACCTTGATCGCCGCCGCGTTT14750698AGCAGAGCTACAGTCGGAAACACGAGCCGCCACATCCTCGAATGTAGCTTTA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:23314070-23314091
TAAAAACAAACCTAGATCGCCGCCGCGTTT23314070AGCAGAGCTACAGTCGGAAACACGAGTGGCCACATCCTCGAAGTTGGCTTTG
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:23314070-23314091
TAAAAACAAACCTAGATCGCCGCCGCGTTT23314070AGCAGAGCTACAGTCGGAAACACGAGTGGCCACATCCTCGAAGTTGGCTTTG
Cheilosia pagana genome assembly, chromosome: 1.
OW386166.1:91303791-91303812
GTTTCTTATTTTTAAGTACACCAGCCTCCT91303791AGCAGAGCTACAGTCGGAAACAATATTTTTTTAAAATTAATTTGGTAATACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGTTTCCGACTGTAGCTCTGCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTTTCCGACTGTAGCTCTGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
3.085 | 3.077 | search_plus_done; http://172.18.8.135:50400/match?q=TGTTTCCGACTGTAGCTCTGCT&k=0&no_gap=0&offset=0&limit=50
3.779 | 0.694 | search_minus_done; http://172.18.8.135:50400/match?q=AGCAGAGCTACAGTCGGAAACA&k=0&no_gap=0&offset=0&limit=11
3.793 | 0.013 | cgi_end;

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