GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 14:27:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Peromyscus eremicus genome assembly, chromosome: 20.
OX460414.1:55021694-55021713
GTAGTGAATTTCATGTCACTTACAACTTTG55021694TGTTTCCGTGATAGTGATGAAGAGACTCCTGAAGACTCTCCACTGAGTTG
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:33395767-33395786
CTTCTCTGTAACTGGATTGGATTCTCTCTA33395767TGTTTCCGTGATAGTGATGACGCCATCTCACCAGCTTGTTATAACAAACT
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR824636.1:209702359-209702378
TGACCGATTACATAATGGTGGCCTTCCACA209702359TGTTTCCGTGATAGTGATGATGATGATGCATTTATTGATGATAGTGATGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828119.1:206095275-206095294
TGACCGATTACATAATGGTGGCCTTCCACA206095275TGTTTCCGTGATAGTGATGATGATGATGCATTTATTGATGATAGTGATGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828150.2:204036323-204036342
TGACCGATTACATAATGGTGGCCTTCCACA204036323TGTTTCCGTGATAGTGATGATGATGATGCATTTATTGATGATAGTGATGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
LR828270.1:202797147-202797166
TGACCGATTACATAATGGTGGCCTTCCACA202797147TGTTTCCGTGATAGTGATGATGATGATGCATTTATTGATGATAGTGATGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
OX459906.1:210469775-210469794
TGACCGATTACATAATGGTGGCCTTCCACA210469775TGTTTCCGTGATAGTGATGATGATGATGCATTTATTGATGATAGTGATGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
OX459981.1:208276274-208276293
TGACCGATTACATAATGGTGGCCTTCCACA208276274TGTTTCCGTGATAGTGATGATGATGATGCATTTATTGATGATAGTGATGA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460099.1:205738303-205738322
TGACCGATTACATAATGGTGGCCTTCCACA205738303TGTTTCCGTGATAGTGATGATGATGATGCATTTATTGATGATAGTGATGA
Hordeum vulgare genome assembly, chromosome: 5H.
OX460233.1:201593069-201593088
TGACCGATTACATAATGGTGGCCTTCCACA201593069TGTTTCCGTGATAGTGATGATGATGATGCATTTATTGATGATAGTGATGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 5H.
OX638795.1:206335327-206335346
TGACCGATTACATAATGGTGGCCTTCCACA206335327TGTTTCCGTGATAGTGATGATGATGATGCATTTATTGATGATAGTGATGA
Dicrocoelium dendriticum genome assembly, scaffold: DDEL_scaffold0022813.
LK416590.1:1319-1338
NNNNNNNNNNNNNNNCTCACAGCGCAACCA1319TGTTTCCGTGATAGTGATGACGTCCCAAGCTGCTGATGCGTGTCGAAGTC
Dicrocoelium dendriticum genome assembly, chromosome: 12.
OX104061.1:10056185-10056204
TTCGGCAGCCGTTATCTCCCAGCGCAACCA10056185TGTTTCCGTGATAGTGATGAGGTCCCAAGCTGCTGACGCGTGTCGAAGTG
Dicrocoelium dendriticum genome assembly, chromosome: 1.
OX104063.1:99120077-99120096
TTCGGCATCCGTTATCTTACAGCGCAACCA99120077TGTTTCCGTGATAGTGATGAGGTCCCAAGCTTCTGACGTGTGTCGAAGTC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:3257634-3257653
AGTTTGTTATAACAAGCTGGTGAGATGGCG3257634TCATCACTATCACGGAAACATAGAGAGAATCCAATCCAGTTACAGAGAAG
Brassica rapa genome, scaffold: A07.
LR031574.1:3159503-3159522
AGTTTGTTATAACAAGCTGGTGAGATGGCG3159503TCATCACTATCACGGAAACATAGAGAGAATCCAATCCAGTTACAGAGAAG
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:3202001-3202020
AGTTTGTTATAACAAGCTGGTGAGATGGCG3202001TCATCACTATCACGGAAACATAGAGAGAATCCAATCCAGTTACAGAGAAG
Dicrocoelium dendriticum genome assembly, chromosome: 1.
OX104063.1:100966414-100966433
AACTTCGACATGCGTCAACAGCTTGGGACC100966414TCATCACTATCACGGAAACATGGTTTGGCTGTGAGATAACCGATGCCGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGTTTCCGTGATAGTGATGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTTTCCGTGATAGTGATGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.107 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=TGTTTCCGTGATAGTGATGA&k=0&no_gap=0&offset=0&limit=50
0.141 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=TCATCACTATCACGGAAACA&k=0&no_gap=0&offset=0&limit=36
0.144 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).