GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 22:46:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea clone BAC Bo37N21, partial sequence.
AY350710.1:44087-44106
TTGAATGGGTACTATTTATTTGTTTTGATG44087TGTTTTGGTGATGGCCAGGAGAAAGAAGGTTTTATGAAGGACTTGTGAGA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:18902617-18902636
TTGAATGGGTACTATTTATTTGTTTTGATG18902617TGTTTTGGTGATGGCCAGGAGAAAGAAGGTTTTATGAAGGACTTGTGAGA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:62595051-62595070
TTGAATGGGTACTATTTATTTGTTTTGATG62595051TGTTTTGGTGATGGCCAGGAGAAAGAAGGTTTTATGAAGGACTTGTGAGA
Brassica rapa genome, scaffold: A10.
LR031577.1:15842333-15842352
TTGAATGGGTACTATTTATTTGTTTTGATG15842333TGTTTTGGTGATGGCCAGGAGAAAGAAGGTTTTATGAAGGACTTGTGAGA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:60532335-60532354
TTGAATGGGTACTATTTATTTGTTTTGATG60532335TGTTTTGGTGATGGCCAGGAGAAAGAAGGTTTTATGAAGGACTTGTGAGA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:18576565-18576584
TTGAATGGGTACTATTTATTTGTTTTGATG18576565TGTTTTGGTGATGGCCAGGAGAAAGAAGGTTTTATGAAGGACTTGTGAGA
Cyprideis torosa.
OB669469.1:4835-4854
GACCTTTGATCTTCCAGCCCAGCCAACCAT4835TGTTTTGGTGATGGCCAGGAACCATTGTTTTGGTGATGGCCAGGAAGTGC
Cyprideis torosa.
OB669469.1:4860-4879
ACCATTGTTTTGGTGATGGCCAGGAACCAT4860TGTTTTGGTGATGGCCAGGAAGTGCCGCAGTTGGTGAAACGAAGCCCTTG
Acomys kempi genome assembly, chromosome: 1.
OU015355.1:166941409-166941428
ATTCCCTTTGTCTTTGGGGGCCATGCGATC166941409TCCTGGCCATCACCAAAACAAACCGGCTGCAGCACCCGGTCAGCTCTCTC
Lateolabrax maculatus linkage group 7 genomic sequence, sequence.
CP032604.1:7626058-7626077
CTCCGTCCCTCTCTCAGCAAGCCTAAAACA7626058TCCTGGCCATCACCAAAACACCACCACCATTACTTAGAGAATAGCCCCCC
Tetrao urogallus genome assembly, chromosome: 4.
OX596298.1:68865851-68865870
CACCACATTACAGGCTGCTTCAGCTGGCAC68865851TCCTGGCCATCACCAAAACAGGAAATCCTAGGAGCTGCTTGTTCAGTTTA
BONGD73TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONGD73, genomic survey sequence.
BZ495708.1:257-276
TCTCACAAGTCCTTCATAAAACCTTCTTTC257TCCTGGCCATCACCAAAACACATCAAAACAAATAAATAGTACCCATTCAA
Brassica oleracea transcription factor-like protein (T2I1_290) gene, partial cds; putative oleosin (GRP1), putative oleosin (GRP2), putative oleosin (GRP3), putative oleosin (GRP4), and putative oleos
AY028608.1:5486-5505
TCTCACAAGTCCTTCATAAAACCTTCTTTC5486TCCTGGCCATCACCAAAACACATCAAAACAAATAAATAGTACCCATTCAA
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:2884662-2884681
TCTCACAAGTCCTTCATAAAACCTTCTTTC2884662TCCTGGCCATCACCAAAACACATCAAAACAAATAAATAGTACCCATTCAA
Aegilops longissima genome assembly, chromosome: 3S.
LR881071.1:12584101-12584120
CTAGGGGGAGCTTGGCGGCGGAGCACCACT12584101TCCTGGCCATCACCAAAACACCACAGCAGGAGAGGTCATGTACGATTGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGTTTTGGTGATGGCCAGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGTTTTGGTGATGGCCAGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.131 | 0.122 | search_plus_done; http://172.18.8.135:50400/match?q=TGTTTTGGTGATGGCCAGGA&k=0&no_gap=0&offset=0&limit=50
0.170 | 0.039 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTGGCCATCACCAAAACA&k=0&no_gap=0&offset=0&limit=42
0.174 | 0.004 | cgi_end;

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