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2025-04-14 03:43:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Oreochromis niloticus fructose-1,6-bisphosphatase 1-like (fbp1) mRNA, partial sequence.
EU848301.1:342-371

TTGGTCCACCAAGATGAACTCACCAATTGC342TTAAAAAAAAAGATATCACTCAGCATAATG

Cocos nucifera EST, clone G9.
AM259063.1:118-147

AAGGTACGGATCCTTTACTGTTTCACATAT118TTAAAAAAAAAGATATCACTCAGCATAATGAATCACTAGTGAATTCGCGGCCGCCTGCAG

54-1 Normalized cDNA from Longissimus Dorsi muscle and backfat tissues of pigs Sus scrofa cDNA 3', mRNA sequence.
CN605606.1:145-174

TGAGAAGAAAAAGGCCCCCCCAAAAAAGTG145TTAAAAAAAAAGATATCACTCAGCATAATG

54-14 Normalized cDNA from Longissimus Dorsi muscle and backfat tissues of pigs Sus scrofa cDNA 3', mRNA sequence.
CN605619.1:217-246

TTTTTCCCTGGCATGTTCCAATGGCGACCT217TTAAAAAAAAAGATATCACTCAGCATAATGAATC

54-22 Normalized cDNA from Longissimus Dorsi muscle and backfat tissues of pigs Sus scrofa cDNA 3', mRNA sequence.
CN605627.1:127-156

CTTTGCTGCATATAAAGTATGAGTCAGCTC127TTAAAAAAAAAGATATCACTCAGCATAATG

cembA02 Differential display of COTTON GENOTYPE, leaf Gossypium arboreum cDNA clone P2T1-4 3', mRNA sequence.
EE298191.1:312-341

AATGCTACACCGCTGGTTCATGTTCTTTTA312TTAAAAAAAAAGATATCACTCAGCATAATG

DDB1 Oreochromis niloticus adult liver Oreochromis niloticus cDNA clone DDB1, mRNA sequence.
GH335062.1:149-178

ATCTTGGAGTAATTAAAGAGGATGTTGTGG149TTAAAAAAAAAGATATCACTCAGCATAATG

DDB3 Oreochromis niloticus adult liver Oreochromis niloticus cDNA clone DDB3, mRNA sequence.
GH335064.1:162-191

TGATATATGTTCCTTTTTCTTAGGATTACA162TTAAAAAAAAAGATATCACTCAGCATAATG

DDB6 Oreochromis niloticus adult liver Oreochromis niloticus cDNA clone DDB6, mRNA sequence.
GH335067.2:142-171

CCTTAAGTCTTTTGCAATTTAGGTTTCCTC142TTAAAAAAAAAGATATCACTCAGCATAATG

BA-Cemb-01 Differential display of COTTON GENOTYPE, leaf, one month of infection Gossypium hirsutum cDNA clone P1T1 3', mRNA sequence.
JZ495600.1:64-93

AACAGTAGTGGTTCGATGCATGTGGGTGTG64TTAAAAAAAAAGATATCACTCAGCATAATGAGTGCTATTAACCCTCACTAATGCTGGGGA

Cp-59 C. parvum HindIII genomic library Cryptosporidium parvum genomic, genomic survey sequence.
DX918428.1:54-83

GGTGGTTGAGATTCCCTATAATAAAATTTT54TTAAAAAAAAAGATATCACTCAGCATAATG

Meloidogyne incognita elongation factor (EF-1) mRNA, partial cds.
AF013290.1:238-267

AAGAAATAGCAGGCTTAAGATGTTAATTAT238TTAAAAAAAAAGATATCACTCAGCATAATGAA

Sequence 4 from patent US 5846780.
AR064046.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAA

Sequence 6 from patent US 6146827.
AR141327.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAA

Sequence 11 from patent US 6593084.
AR353572.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAA

Sequence 37 from Patent WO0240666.
AX431404.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAA

Sequence 117 from Patent WO03074073.
AX828471.1:25-54

GCGGCCGCGAATTCACTAGTGATT25CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

Sequence 163 from Patent WO03074073.
AX828517.1:1132-1161

ACGCGTGCGGCCGCGAATTCACTAGTGATT1132CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

JP 2002515754-A/2: Method for identifying translationally regulated genes.
BD195186.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAA

Sequence 117 from Patent EP1566387.
CS145901.1:25-54

GCGGCCGCGAATTCACTAGTGATT25CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

Sequence 163 from Patent EP1566387.
CS145947.1:1132-1161

ACGCGTGCGGCCGCGAATTCACTAGTGATT1132CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

Sequence 101 from Patent WO2006075084.
CS359762.1:1126-1155

GAATTCACGCGTGGCCGCGGGAATTCGATT1126CATTATGCTGAGTGATATCTTTTTTTTTAACTTCATTTTATGTTATTATCATGATTGATG

JP 2004512852-A/28: Fat Regulated Genes, Uses Thereof, and Compounds for Modulating Same.
DD010090.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAA

JP 2005532788-A/68: Genes implicated in the regulation of angiogenesis, pharmaceutical preparations containing them and their applications.
DD271776.1:25-54

GCGGCCGCGAATTCACTAGTGATT25CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

JP 2005532788-A/114: Genes implicated in the regulation of angiogenesis, pharmaceutical preparations containing them and their applications.
DD271822.1:1132-1161

ACGCGTGCGGCCGCGAATTCACTAGTGATT1132CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

JP 2003235570-A/11: Polypeptide having interaction with hibernation-specific protein and its utilization.
DJ389559.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAA

JP 2009050262-A/68: GENES INVOLVED IN REGULATING ANGIOGENESIS, PHARMACEUTICAL PREPARATIONS CONTAINING SAME AND APPLICATIONS THEREOF.
DM161579.1:25-54

GCGGCCGCGAATTCACTAGTGATT25CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

JP 2009050262-A/114: GENES INVOLVED IN REGULATING ANGIOGENESIS, PHARMACEUTICAL PREPARATIONS CONTAINING SAME AND APPLICATIONS THEREOF.
DM161625.1:1132-1161

ACGCGTGCGGCCGCGAATTCACTAGTGATT1132CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

Sequence 117 from patent US 7553492.
GP455766.1:25-54

GCGGCCGCGAATTCACTAGTGATT25CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

Sequence 163 from patent US 7553492.
GP455812.1:1132-1161

ACGCGTGCGGCCGCGAATTCACTAGTGATT1132CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

Sequence 117 from patent US 8133877.
GZ200177.1:25-54

GCGGCCGCGAATTCACTAGTGATT25CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

Sequence 163 from patent US 8133877.
GZ200223.1:1132-1161

ACGCGTGCGGCCGCGAATTCACTAGTGATT1132CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

Sequence 19 from patent US 8349562.
GZ703056.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAA

Sequence 117 from Patent EP2161280.
HC465975.1:25-54

GCGGCCGCGAATTCACTAGTGATT25CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

Sequence 163 from Patent EP2161280.
HC466021.1:1132-1161

ACGCGTGCGGCCGCGAATTCACTAGTGATT1132CATTATGCTGAGTGATATCTTTTTTTTTAATATACTTTTGGAATTCTCAGTGAATTTGTT

Sequence 19 from patent US 9109258.
HL076168.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAA

WO 1998045431-A/17: Cancer metastasis-associated gene.
HV447456.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAA

7 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi214, mRNA sequence.
CB275457.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAACTTTTTTTTTTTTCATGAAGGTTTGAGTTT

26 Differentially expressed Dermacentor variabilis cDNA fragments Dermacentor variabilis cDNA clone Oi618, mRNA sequence.
CB275476.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAACTCATGCTATCAGTTATGTGCGAGGAGAGT

DQ886385 Phaeocystis globosa isolate CCMP 1528 Phaeocystis globosa cDNA clone pGC-10, mRNA sequence.
DQ886385.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAATTCTTTCTTGGTCTGTCTAGTAAGAGAAGC

CEDD2 Casuarina equisetifolia 48 hours post elicitation with pathogen cell wall components Casuarina equisetifolia subsp. equisetifolia cDNA, mRNA sequence.
GR228673.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAATGGAATAACCCCAATCCCAATTAGTGTCAG

CEDD4 Casuarina equisetifolia 48 hours post elicitation with pathogen cell wall components Casuarina equisetifolia subsp. equisetifolia cDNA, mRNA sequence.
GR228675.1:2-31

T2CATTATGCTGAGTGATATCTTTTTTTTTAATGGAATAACCCCAATCCCAATTAGTGTCAG

Cp-44 C. parvum HindIII genomic library Cryptosporidium parvum genomic, genomic survey sequence.
DX918437.1:1-30

1CATTATGCTGAGTGATATCTTTTTTTTTAACTATATTTCCAGTTGGTATTGTAGTCCAAC

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.661 | 0.651 | search_plus_done; http://172.18.8.135:50400/match?q=TTAAAAAAAAAGATATCACTCAGCATAATG&k=0&no_gap=0&offset=0&limit=50
1.448 | 0.788 | search_minus_done; http://172.18.8.135:50400/match?q=CATTATGCTGAGTGATATCTTTTTTTTTAA&k=0&no_gap=0&offset=0&limit=38
1.470 | 0.022 | cgi_end;

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