GGGenome | Results

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2025-04-17 11:46:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sequence 1228 from patent US 10006042.
MI845955.1:350-373

TCGGCTCAGGAGAAAACAGTGGTTATAGGC350TTAGCAGCAGACTCAGGATGTGGGAAAAGTACTTTCATGAGAAGATTAACAAGT

Sequence 1398 from patent US 10006042.
MI846125.1:345-368

TGCTCAGCTGAGAAAACAGTTGTTATAGGC345TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

Sequence 1228 from patent US 10337023.
MO169122.1:350-373

TCGGCTCAGGAGAAAACAGTGGTTATAGGC350TTAGCAGCAGACTCAGGATGTGGGAAAAGTACTTTCATGAGAAGATTAACAAGT

Sequence 1398 from patent US 10337023.
MO169292.1:345-368

TGCTCAGCTGAGAAAACAGTTGTTATAGGC345TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

Sequence 1228 from patent US 10774340.
MV702869.1:350-373

TCGGCTCAGGAGAAAACAGTGGTTATAGGC350TTAGCAGCAGACTCAGGATGTGGGAAAAGTACTTTCATGAGAAGATTAACAAGT

Sequence 1398 from patent US 10774340.
MV703039.1:345-368

TGCTCAGCTGAGAAAACAGTTGTTATAGGC345TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

Sequence 1228 from patent US 11499161.
OO870650.1:350-373

TCGGCTCAGGAGAAAACAGTGGTTATAGGC350TTAGCAGCAGACTCAGGATGTGGGAAAAGTACTTTCATGAGAAGATTAACAAGT

Sequence 1398 from patent US 11499161.
OO870820.1:345-368

TGCTCAGCTGAGAAAACAGTTGTTATAGGC345TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CGN-26626 Leaf Coffea canephora cDNA clone cccl3k13 5', mRNA sequence.
DV685338.1:263-286

TGCTCAGCTGAAAAAACAGTTGTTATAGGC263TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGT

CGN-29447 Leaf Coffea canephora cDNA clone cccl8n17 5', mRNA sequence.
DV687445.1:246-269

TGCTCAGCGGAAAAAACAGTTGTTATAGGC246TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CGN-30078 Leaf Coffea canephora cDNA clone cccl1n24 5', mRNA sequence.
DV687910.1:243-266

TGCTCAGCTGAAAAAACAGTTGTTATAGGC243TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGT

CGN-31340 Leaf Coffea canephora cDNA clone cccl18c7 5', mRNA sequence.
DV688601.1:228-251

TGCTCAGCGGAAAAAACAGTTGTTATAGGC228TTAGCAGCAGACTCAGGATGTGGGAAGATTACTTTCATGAGAAGATTAACAAGC

CGN-31520 Leaf Coffea canephora cDNA clone cccl23o11 5', mRNA sequence.
DV688727.1:260-283

TGCTCAGCGGAAAAAACAGTTGTTATAGGC260TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CGN-31780 Leaf Coffea canephora cDNA clone cccl21n22 5', mRNA sequence.
DV688905.1:357-380

TGCTCAGCGGAAAAAACAGTTGTTATAGGC357TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CGN-33098 Leaf Coffea canephora cDNA clone cccl21n7 5', mRNA sequence.
DV689900.1:86-109

TGCTCAGCGGAGAAAACAGTTGTTATAGGC86TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CGN-35290 Leaf Coffea canephora cDNA clone cccl16j23 5', mRNA sequence.
DV691576.1:226-249

TGCTCAGCTGAGAAAACAGTTGTTATAGGC226TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGT

CGN-35775 Leaf Coffea canephora cDNA clone cccl19o17 5', mRNA sequence.
DV691968.1:53-76

TGCTCAGCGGAGAAAACAGTTGTTATCCGC53TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CGN-35808 Leaf Coffea canephora cDNA clone cccl17f14 5', mRNA sequence.
DV691992.1:87-110

TGCTCAGCGGAGAAAACAGTTGTTATAGGC87TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CGN-36427 Leaf Coffea canephora cDNA clone cccl19n3 5', mRNA sequence.
DV692493.1:267-290

TGCTCAGCTGAAAAAACAGTTGTTATAGGC267TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAAAAGATTAACAAGT

CGN-42130 Leaf Coffea canephora cDNA clone cccl28l14 5', mRNA sequence.
DV696851.1:228-251

TGCTCAGCGAAAAAAACAGTTGTTATAGGC228TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CGN-42308 Leaf Coffea canephora cDNA clone cccl28o17 5', mRNA sequence.
DV696999.1:212-235

TGCTCAGCGGAGAAAACAGTTGTTATAGGC212TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CGN-42688 Leaf Coffea canephora cDNA clone cccl30a16 5', mRNA sequence.
DV697306.1:227-250

TGCTCAGCTGAGAAAACAGTTGTTATAGGC227TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGT

CGN-42818 Leaf Coffea canephora cDNA clone cccl29h1 5', mRNA sequence.
DV697420.1:268-291

TGCTCAGCTGAGAAAACAGTTGTTATAGGC268TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGT

CC-L01_015_B02 Coffea young leaves Coffea canephora cDNA clone CC-L01_015_B02, mRNA sequence.
EE192805.1:241-264

TGCTCAGCTGAGAAAACAGTTGTTATAGGC241TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGT

CC-L01_021_G12 Coffea young leaves Coffea canephora cDNA clone CC-L01_021_G12, mRNA sequence.
EE193327.1:233-256

TGCTCAGCTGAGAAAACAGTTGTTATAGGC233TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGT

CC-L01_022_B04 Coffea young leaves Coffea canephora cDNA clone CC-L01_022_B04, mRNA sequence.
EE193350.1:217-240

TGCTCAGCTGAGAAAACAGTTGTTATAGGC217TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CC-L01_032_H03 Coffea young leaves Coffea canephora cDNA clone CC-L01_032_H03, mRNA sequence.
EE194133.1:232-255

TGCTCAGCTGAGAAAACAGTTGTTATAGGC232TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CC-L01_057_C10 Coffea young leaves Coffea canephora cDNA clone CC-L01_057_C10, mRNA sequence.
EE195301.1:347-370

TGCTCAGCTGAGAAAACAGTTGTTATAGGC347TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

TransId-240779 CAET42MIX Coffea arabica cDNA clone CAET42MIX-CFEYX62TV similar to Phosphoribulokinase - Oryza sativa (japonica cultivar-group), mRNA sequence.
GT009567.1:280-303

TGCTCAGCTGAGAAAACAGTTGTTATAGGC280TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV4-046-A02-JM.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-046-A02-JM, mRNA sequence.
GT694263.1:202-225

TGCTCAGCTGAGAAAACAGTTGTTATAGGC202TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV8-019-A05-EP.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-019-A05-EP, mRNA sequence.
GT700979.1:245-268

TGCTCAGCTGAGAAAACAGTTGTTATAGGC245TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV8-055-E09-AG.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-055-E09-AG, mRNA sequence.
GT700980.1:201-224

TGCTCAGCTGAGAAAACAGTTGTTATAGGC201TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV8-016-E09-JF.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-016-E09-JF, mRNA sequence.
GT700981.1:137-160

TGCTCAGCTGAGAAAACAGTTGTTATAGGC137TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV9-001-A10-EZ.F Coffea arabica LV9 Coffea arabica cDNA clone CA00-XX-LV9-001-A10-EZ, mRNA sequence.
GT712182.1:200-223

TGCTCAGCTGAGAAAACAGTTGTTATAGGC200TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-SH2-011-H11-EM.F Coffea arabica SH2 Coffea arabica cDNA clone CA00-XX-SH2-011-H11-EM, mRNA sequence.
GT717805.1:140-163

TGCTCAGCTGAGAAAACAGTTGTTATAGGC140TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-BP1-086-D11-BF.F Coffea arabica BP1 Coffea arabica cDNA clone CA00-XX-BP1-086-D11-BF, mRNA sequence.
GT722325.1:201-224

TGCTCAGCTGAGAAAACAGTTGTTATAGGC201TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-RX1-004-G10-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-004-G10-EB, mRNA sequence.
GT730748.1:201-224

TGCTCAGCTGAGAAAACAGTTGTTATAGGC201TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-RX1-021-D11-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-021-D11-EB, mRNA sequence.
GW443121.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-BP1-060-D04-EP.F Coffea arabica BP1 Coffea arabica cDNA clone CA00-XX-BP1-060-D04-EP, mRNA sequence.
GW452832.1:239-262

TGCTCAGCTGAGAAAACAGTTGTTATAGGC239TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-BP1-117-B10-CB.F Coffea arabica BP1 Coffea arabica cDNA clone CA00-XX-BP1-117-B10-CB, mRNA sequence.
GW454000.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-IC1-033-E12-EC.F Coffea arabica IC1 Coffea arabica cDNA clone CA00-XX-IC1-033-E12-EC, mRNA sequence.
GW461726.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATATGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV4-042-H03-JM.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-042-H03-JM, mRNA sequence.
GW465341.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV4-031-E08-JM.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-031-E08-JM, mRNA sequence.
GW465467.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV4-002-A12-EZ.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-002-A12-EZ, mRNA sequence.
GW465698.1:201-224

TGCTCAGCTGAGAAAACAGTTGTTATAGGC201TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV4-066-C02-AC.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-066-C02-AC, mRNA sequence.
GW466115.1:132-155

TGCTCAGCTGAGAAAACAGTTGTTATAGGC132TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV9-031-G10-JF.F Coffea arabica LV9 Coffea arabica cDNA clone CA00-XX-LV9-031-G10-JF, mRNA sequence.
GW466867.1:191-214

TGCTCAGCTGAGAAAACAGTTGTTATAGGC191TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV8-081-C09-JM.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-081-C09-JM, mRNA sequence.
GW470676.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV8-017-H11-JM.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-017-H11-JM, mRNA sequence.
GW471567.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV8-085-G10-AB.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-085-G10-AB, mRNA sequence.
GW472152.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV8-092-B04-CB.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-092-B04-CB, mRNA sequence.
GW472280.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV8-081-D09-JM.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-081-D09-JM, mRNA sequence.
GW477995.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV8-024-B12-CB.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-024-B12-CB, mRNA sequence.
GW479378.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV8-063-B09-MC.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-063-B09-MC, mRNA sequence.
GW479440.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-FB2-021-A08-BM.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-021-A08-BM, mRNA sequence.
GW484865.1:157-180

TGCTCAGCTGAGAAAACAGTTGTTATAGGC157TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV9-031-G11-JF.F Coffea arabica LV9 Coffea arabica cDNA clone CA00-XX-LV9-031-G11-JF, mRNA sequence.
GW486976.1:216-239

TGCTCAGCTGAGAAAACAGTTGTTATAGGC216TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV4-044-H09-UT.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-044-H09-UT, mRNA sequence.
GW488350.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV4-021-C04-MC.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-021-C04-MC, mRNA sequence.
GW488507.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

CA00-XX-LV4-061-A06-BF.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-061-A06-BF, mRNA sequence.
GW489092.1:192-215

TGCTCAGCTGAGAAAACAGTTGTTATAGGC192TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

TSA: Litopenaeus vannamei mRNA sequence.
JP385701.1:122-145

GGAAGTGAAGAACAGACATTAGTGATTGGG122TTAGCAGCAGACTCAGGATGTGGGAAAAGCACTTTTATGAGAAGGTTAACAAGT

CCES81 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110721.1:355-378

TGCTCAGCGGAAAAAACAGTTGTTATAGGC355TTAGCAGCAGACTCAGGATGTGGGAAGAGTACTTTCATGAGAAGATTAACAAGC

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Debug Info:

0.009 | 0.009 | search_start;
4.254 | 4.245 | search_plus_done; http://172.18.8.135:50400/match?q=TTAGCAGCAGACTCAGGATGTGGG&k=0&no_gap=0&offset=0&limit=50
4.326 | 0.072 | search_minus_done; http://172.18.8.135:50400/match?q=CCCACATCCTGAGTCTGCTGCTAA&k=0&no_gap=0&offset=0&limit=0
4.326 | 0.000 | cgi_end;

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