GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a001G10_SP6.
AM056674.1:495-514

ACCGTTTGATTTCGACCATCTGGGTTGGTT495TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a003D13_SP6.
AM057134.1:528-547

ACCGTTTGATTTCGACCATCTGGGTTGGTT528TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a007A11_SP6.
AM058172.1:378-397

ACCGTTTGATTTCGACCATCTGGGTTGGTT378TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a013I05_SP6.
AM059927.1:506-525

ACCGTTTGATTTCGNCCATCTGGGTTGGTT506TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTNNNATG

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a014M15_SP6.
AM060295.1:505-524

ACCGTTTGATTTCGACCATCTGGGTTGGTT505TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a015O02_SP6.
AM060618.1:490-509

ACCGTTTGATTTCGACCATCTGGGTTGGTT490TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a020E08_SP6.
AM061861.1:150-169

ACCGTTTGATTTCGACCATCTGGGTTGGTT150TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a022J08_SP6.
AM062518.1:521-540

ACCGTTTGATTTCGACCATCTGGGTTGGTT521TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a003B02_T7.
AM388513.1:387-406

ACCGTTTGATTTCGACCATCTGGGTTGGTT387TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a012P01_T7.
AM390560.1:484-503

ACCGTTTGATTTCGACCATCTGGGTTGGTT484TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a013D20_T7.
AM390624.1:516-535

ACCGTTTGATTTCGNCCATCTGGGTTGGTT516TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a013P05_T7.
AM390781.1:108-127

ACCGTTTGATTTCGACCATCTGGGTTGGTT108TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

BN40.041N16F011207 BN40 Brassica napus cDNA clone BN40041N16, mRNA sequence.
CD829353.1:114-133

ACCGTTTGATTTCGACCATCTGGGTTGGTT114TTCAACGGTGGTAATGCGTCCTCTGGTCTCTGGTAATGTTTCTACTGTTT

BN40.043P21F011226 BN40 Brassica napus cDNA clone BN40043P21, mRNA sequence.
CD829985.1:535-554

ACCGTTTGATTTCGACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

BN40.066P19F011228 BN40 Brassica napus cDNA clone BN40066P19, mRNA sequence.
CD833369.1:204-223

ACCGTTTGATTTCGACCATCTGGGTTGGTT204TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

BN45.040I03F011018 BN45 Brassica napus cDNA clone BN45040I03, mRNA sequence.
CD834077.1:535-554

ACCGTTTGATTACGACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

RFO2.111N04F010523 RFO2 Brassica napus cDNA clone RFO2111N04, mRNA sequence.
CD838584.1:68-87

ACCGTTTGATTTCGACCATCTGGGTTGGTT68TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

RFO2.117H02F010601 RFO2 Brassica napus cDNA clone RFO2117H02, mRNA sequence.
CD839998.1:68-87

ACCGTTTGATTTCGACCATCTGGGTTGGTT68TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

RFO2.117K13F010531 RFO2 Brassica napus cDNA clone RFO2117K13, mRNA sequence.
CD840037.1:533-552

ACCGTTTGATTTCGACCATCTGGGTTGGTT533TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

RFO2.118M14F010601 RFO2 Brassica napus cDNA clone RFO2118M14, mRNA sequence.
CD840318.1:534-553

ACCGTTTGATTTCGACCATCTGGGTTGGTT534TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

RFO2.121P17F010608 RFO2 Brassica napus cDNA clone RFO2121P17, mRNA sequence.
CD841154.1:555-574

ACCGTTTGATTTCGACCATCTGGGTTGGTT555TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

RFO2.125A07F010621 RFO2 Brassica napus cDNA clone RFO2125A07, mRNA sequence.
CD841872.1:558-577

ACCGTTTGATTTCGACCATCTGGGTTGGTT558TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

RFO2.125G24F010622 RFO2 Brassica napus cDNA clone RFO2125G24, mRNA sequence.
CD841966.1:534-553

ACCGTTTGATTTCGACCATCTGGGTTGGTT534TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

RFO2.126M17F010914 RFO2 Brassica napus cDNA clone RFO2126M17, mRNA sequence.
CD842264.1:533-552

ACCGTTTGATTTCGACCATCTGGGTTGGTT533TTCAACGGTGGTAATGCGTCCCCTTGTCTCTTGTAATGTTTCTACTGTTT

RFO2.127F19F010919 RFO2 Brassica napus cDNA clone RFO2127F19, mRNA sequence.
CD842396.1:534-553

ACCGTTTGATTTCGACCATCTGGGTTGGTT534TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

RFO2.127I24F010919 RFO2 Brassica napus cDNA clone RFO2127I24, mRNA sequence.
CD842437.1:532-551

ACCGTTTGATTTCGACCATCTGGGTTGGTT532TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

11FGYSDB_UP_002_B10_16OCT2003_078 Brassica seedling 11FGYSDB Brassica napus cDNA 5', mRNA sequence.
CN729228.1:535-554

ACCGTTTGATTTCGACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

72-E011253-021-008-O17-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022O178Q, mRNA sequence.
CX189706.1:395-414

ACCGTTTGATTTCGACCATCTGGGTTGGTT395TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

61-E022765-021-014-I15-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022I1514Q, mRNA sequence.
CX190723.1:402-421

ACCGTTTGATTTCGACCATCTGGGTTGGTT402TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

41-E022767-021-014-B11-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022B1114Q, mRNA sequence.
CX192547.1:535-554

ACCGTTTGATTTCGACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

13-E022901-021-017-J04-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022J0417Q, mRNA sequence.
CX195117.1:495-514

ACCGTTTGATTTCGACCATCTGGGTTGGTT495TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

20ACACDS_UP_001_A10_09MAR2004_080 Brassica napus 20ACACDS Brassica napus cDNA 5', mRNA sequence.
CX277931.1:535-554

ACCGTTTGATTTCGACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

20ACACDS_UP_002_G11_09MAR2004_083 Brassica napus 20ACACDS Brassica napus cDNA 5', mRNA sequence.
CX278088.1:535-554

ACCGTTTGATTTCGACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

20ACACDS_UP_003_A10_09MAR2004_080 Brassica napus 20ACACDS Brassica napus cDNA 5', mRNA sequence.
CX278109.1:535-554

ACCGTTTGATTTCGACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

20ACACDS_UP_003_C12_09MAR2004_092 Brassica napus 20ACACDS Brassica napus cDNA 5', mRNA sequence.
CX278135.1:534-553

ACCGTTTGATTTCGACCATCTGGGTTGGTT534TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

JKBNHS1_UP_012_A04_02JUL2004_032 Brassica napus JKBNHS1 Brassica napus cDNA 5', mRNA sequence.
CX281743.1:535-554

ACCGTTTGATTTCGACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea var. viridis mRNA, clone: KALE-095A10, 5' end sequence.
DK491891.1:535-554

ACCGTTTGATTTCCACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea var. viridis mRNA, clone: KALE-126C22, 5' end sequence.
DK503804.1:529-548

ACCGTTTGATTTCCACCATCTGGGTTGGTT529TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea var. viridis mRNA, clone: KALE-095A10, 3' end sequence.
DK551473.1:535-554

ACCGTTTGATTTCCACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTTTACTGTTT

Brassica oleracea var. viridis mRNA, clone: KALE-126C22, 3' end sequence.
DK563366.1:529-548

ACCGTTTGATTTCCACCATCTGGGTTGGTT529TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

16ACDHDS_UP_013_G03_15OCT2004_019 Brassica napus 16ACDHDS Brassica napus cDNA 5', mRNA sequence.
EE402703.1:196-215

ACCGTTTGATTTCGACCATCTGGGTTGGTT196TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

16ACDHDS_UP_022_H10_26OCT2004_066 Brassica napus 16ACDHDS Brassica napus cDNA 5', mRNA sequence.
EE403433.1:535-554

ACCGTTTGATTTCGACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

16ACDHDS_UP_030_E05_26OCT2004_039 Brassica napus 16ACDHDS Brassica napus cDNA 5', mRNA sequence.
EE404081.1:533-552

ACCGTTTGATTTCGACCATCTGGGTTGGTT533TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

55ACACPE_UP_017_B12_15DEC2004_094 Brassica napus AC Excell Brassica napus cDNA 5', mRNA sequence.
EE411061.1:533-552

CCGTTTGATTTCGACCATCTGGGGTTGGTT533TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGGTT

56ACAC48_UP_016_C06_17DEC2004_044 Brassica napus Brassica napus cDNA 5', mRNA sequence.
EE413367.1:535-554

ACCGTTTGATTTCGACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

56ACAC48_UP_029_A03_22DEC2004_031 Brassica napus Brassica napus cDNA 5', mRNA sequence.
EE414309.1:535-554

ACCGTTTGATTTCGACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

58ACPE48_UP_007_G02_17SEP2004_004 Brassica napus seed library Brassica napus cDNA 5', mRNA sequence.
EE417613.1:535-554

ACCGTTTGATTTCGACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

73ETGS36_UP_011_F05_19MAY2005_037 73ETGS36 Brassica napus cDNA 5', mRNA sequence.
EE445603.1:535-554

ACCGTTTGATTTCGACCATCTGGGTTGGTT535TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAAATGTTTCTACTGTT

74ETGS48_UP_019_E01_28APR2005_007 74ETGS48 Brassica napus cDNA 5', mRNA sequence.
EE447805.1:536-555

CCGTTTGATTTCGAGCATCTGGGTTGGTTT536TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

75ETGS60_UP_002_B01_02MAY2005_013 75ETGS60 Brassica napus cDNA 5', mRNA sequence.
EE448041.1:351-370

ACCGTTTGATTTCGACCATCTGGGTTGGTT351TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica oleracea auxin-repressed protein (ARP1) mRNA, complete cds.
AF458410.1:515-534

ACCGTTTGATTTCCACCATCTGGGTTGGTT515TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:68125006-68125025

ACCGTTTGATTTCGACCATCTGGGTTGGTT68125006TTCAACGGTGGTAATGCGTCCTCTTGTCTCTTGTAATGTTTCTACTGTTT

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Debug Info:

0.009 | 0.009 | search_start;
1.490 | 1.481 | search_plus_done; http://172.18.8.135:50400/match?q=TTCAACGGTGGTAATGCGTC&k=0&no_gap=0&offset=0&limit=50
1.556 | 0.067 | search_minus_done; http://172.18.8.135:50400/match?q=GACGCATTACCACCGTTGAA&k=0&no_gap=0&offset=0&limit=0
1.556 | 0.000 | cgi_end;

Summary:

Results:

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