GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 03:45:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS1CP52TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX890150.1:425-446
AGCCACAGAGAAGCAAGACGAGTCCACATC425TTCGAAAAGACAGTGGTCCTCATCCTCTCTGTTGGAGGACCCTCAGGTCCTG
RS2FZ96TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD572242.1:479-500
GCCACAGAGAAGCAAGATGGAGTTCACATC479TTCGAAAAGACAGTGGTCCTCATCCTCTCTGTCGGACCCTCAGGTCCTGTAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_33634.
FX792765.1:375-396
GCCACAGAGAAGCAAGACGGAGTCCACATC375TTCGAAAAGACAGTGGTCCTCATCCTCTCTGTTGGAGGACCCTCAGGTCCTG
RS1CP52JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX893721.1:587-608
CAGGACCTGAGGGTCCTCCAACAGAGAGGA587TGAGGACCACTGTCTTTTCGAAGATGTGGACTCGTCTTGCTTCTCTGTGGCT
RS2FZ96JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD575921.1:584-605
CTACAGGACCTGAGGGTCCGACAGAGAGGA584TGAGGACCACTGTCTTTTCGAAGATGTGAACTCCATCTTGCTTCTCTGTGGC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_13637.
FX663908.1:554-575
CAGGACCTGAGGGTCCTCCAACAGAGAGGA554TGAGGACCACTGTCTTTTCGAAGATGTGGACTCCGTCTTGCTTCTCTGTGGC
TSA: Raphanus sativus RS27218 mRNA sequence.
JT811765.1:330-351
CAGGACCTGAGGGTCCTCCAACAGAGAGGA330TGAGGACCACTGTCTTTTCGAAGATGTGGACTCCGTCTTGCTTCTCTGTGGC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:14371256-14371277
CTACAGGACCTGAGGGTCCAACAGAGAGGA14371256TGAGGACCACTGTCTTTTCGAAGATGTGAACTCCATCTTGCTTCTCTGTGGC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:14371256-14371277
CTACAGGACCTGAGGGTCCAACAGAGAGGA14371256TGAGGACCACTGTCTTTTCGAAGATGTGAACTCCATCTTGCTTCTCTGTGGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCGAAAAGACAGTGGTCCTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCGAAAAGACAGTGGTCCTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.207 | 0.198 | search_plus_done; http://172.18.8.135:50400/match?q=TTCGAAAAGACAGTGGTCCTCA&k=0&no_gap=0&offset=0&limit=50
0.357 | 0.150 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGGACCACTGTCTTTTCGAA&k=0&no_gap=0&offset=0&limit=47
0.361 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).