GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 17:49:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES02N20, 5' end sequence.
FY383172.1:89-108
ACCCCAACTTCCAAGCTCAAACTCCACTCC89CCAACCGTCTCTAAACCGAAACTCATCACCGCCTCGTCGACCACCTCTAC
Dianthus caryophyllus mRNA, clone: CES11_E09, 5' end sequence.
FY386363.1:56-75
ACCCCAACTTCCAAGCTCAAACTCCACTCC56CCAACCGTCTCTAAACCGAAACTCATCACCGCCTCGTCGACCACCTCTAC
Dianthus caryophyllus mRNA, clone: CES22J10, 5' end sequence.
FY390625.1:79-98
ACCCCAACTTCCAAGCTCAAACTCCACTCC79CCAACCGTCTCTAAACCGAAACTCATCACCGCCTCGTCGACCACCTCTAC
TSA: Dianthus caryophyllus mRNA, contig: CAK09.109.C1.
FX296707.1:88-107
ACCCCAACTTCCAAGCTCAAACTCCACTCC88CCAACCGTCTCTAAACCGAAACTCATCACCGCCTCGTCGACCACCTCTAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCGGTTTAGAGACGGTTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCGGTTTAGAGACGGTTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.091 | 0.082 | search_plus_done; http://172.18.8.135:50400/match?q=TTCGGTTTAGAGACGGTTGG&k=0&no_gap=0&offset=0&limit=50
0.349 | 0.258 | search_minus_done; http://172.18.8.135:50400/match?q=CCAACCGTCTCTAAACCGAA&k=0&no_gap=0&offset=0&limit=50
0.352 | 0.003 | cgi_end;

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