GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-12 13:57:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Populus nigra mRNA, clone: PnFL2-099_D14, 3'end.
DB909934.1:256-275
GAGCAGCAATCTCCAGTCCTAATTGTTTGT256TTCGTCCTTCCTGTTGCTGATATCTTCATAATCTAAATCACCACCAAGCA
WS02418.B21_F06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02418_F06 3', mRNA sequence.
DT512090.1:283-302
GAGCAGCAATCTCCAGTCCTAATTGTTTGT283TTCGTCCTTCCTGTTGCTGATATCTTCATAATCTAAATCACCACCAAGCA
Populus nigra genome assembly, chromosome: 13.
OX637684.1:11651427-11651446
GAGCAGCAATCTCCAGTCCTAATTGTTTGT11651427TTCGTCCTTCCTGTTGCTGATATCTTCATAATCTAAATCACCACCAAGCA
Leucozona laternaria genome assembly, chromosome: 2.
OW026367.1:22673865-22673884
GCCATTGTTTTTTTTTTTTTGTTTGTGTCC22673865TTCGTCCTTCCTGTTGCTGATGATTAGCTCACAGGCTCACACTCACAGGA
Dasysyrphus albostriatus genome assembly, chromosome: 2.
OX276336.1:11744541-11744560
TTTTTTTAGTGTGTGTAGGTAAGAATGGCC11744541TTCGTCCTTCCTGTTGCTGATGATGAGCTCACAGGAAAGAGGTAGCACAA
Chrysotoxum festivum genome assembly, chromosome: 3.
OZ007556.1:21428914-21428933
GTTTTTATTTCTGTGTAGTAAAGTATGTCC21428914TTCGTCCTTCCTGTTGCTGATGATGATGAGTTCACAGGAAAGAGGTAGCA
JP 2015516143-A/173472: MODIFIED POLYNUCLEOTIDES FOR THE PRODUCTION OF PROTEINS ASSOCIATED WITH HUMAN DISEASE.
LF579101.1:275-294
CTAGAGAAGAGAGTACAAGCTCCGGGAACG275TCAGCAACAGGAAGGACGAAACTAACGCCAGAGACACTTACGTCTCGTCC
JP 2017121241-A/173472: MODIFIED POLYNUCLEOTIDES FOR THE PRODUCTION OF PROTEINS ASSOCIATED WITH HUMAN DISEASE.
LZ019432.1:275-294
CTAGAGAAGAGAGTACAAGCTCCGGGAACG275TCAGCAACAGGAAGGACGAAACTAACGCCAGAGACACTTACGTCTCGTCC
JP 2019054813-A/173472: MODIFIED POLYNUCLEOTIDES FOR THE PRODUCTION OF PROTEINS ASSOCIATED WITH HUMAN DISEASE.
MD613245.1:275-294
CTAGAGAAGAGAGTACAAGCTCCGGGAACG275TCAGCAACAGGAAGGACGAAACTAACGCCAGAGACACTTACGTCTCGTCC
Epistrophella euchroma genome assembly, chromosome: 3.
OX346247.1:113731669-113731688
TGGTGTTACCTCTTTCCTGTGAGCTCATCA113731669TCAGCAACAGGAAGGACGAAGGACAAACAAAACAAAACGAAGAAAAAAAA
Epistrophe eligans genome assembly, chromosome: 2.
OX596029.1:102944055-102944074
TGGTACTACCTCTTTCCTGTGAGCTAATCA102944055TCAGCAACAGGAAGGACGAAGGACACACACAAAAAAAAAAAAACAATGGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCGTCCTTCCTGTTGCTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCGTCCTTCCTGTTGCTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.173 | 0.164 | search_plus_done; http://172.18.8.135:50400/match?q=TTCGTCCTTCCTGTTGCTGA&k=0&no_gap=0&offset=0&limit=50
0.330 | 0.157 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGCAACAGGAAGGACGAA&k=0&no_gap=0&offset=0&limit=44
0.334 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).