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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 00:05:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

020805AVBC013082HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC013082, mRNA sequence.
CN948355.1:328-350
TTGCTCGGGTCCTTGAGGAACTCCTTGACT328TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Mdlv2_4023e18.y1 Mdlv2 Malus domestica cDNA clone Mdlv2_4023e18 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CV655921.1:308-330
TTGCTTGGGTCCTTGAGAAACTCCTTGACC308TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Mdlv4-4047o20.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4047o20 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CX023426.1:332-354
TTGCTTGGGTCCTTGAGAAACTCCTTGACC332TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Mdlv4-4047l19.y1 Mdlv4 Malus domestica cDNA clone Mdlv4-4047l19 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CX023492.1:320-342
TTGCTCGGGTCCTTGAGGAACTCCTTGACT320TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Mdfb8003O17.g1 Apple_EST_Mdfb Malus domestica cDNA similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S acidic ribosomal protein P0-C gb|
DT001515.1:334-356
TTGCTCGGGTCCTTGAGGAACTCCTTGACT334TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Mdfrt3107O07_e12407.g1 Mdfrt Malus domestica cDNA 5' similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S acidic ribosomal protein P0-C g
GO549644.1:358-380
TTGCTTGGGTCCTTGAGAAACTCCTTGACC358TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Mdrtp1002E21_e37387.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA 5' similar to ref|NP_187734.1| 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] sp|P57691|RL0C_ARATH 60S aci
GO562335.1:357-379
TTGCTTGGGTCCTTGAGAAACTCCTTGACC357TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Mdfrb3144D17_e4860.b1 Apple_EST_Mdfrb Malus domestica cDNA 3' similar to gb|AAF34767.1|AF227622_1 60S acidic ribosomal protein PO [Euphorbia esula], mRNA sequence.
GO567337.1:374-396
TTGCTCGGGTCCTTGAGGAACTCCTTGACT374TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Pyrus pyrifolia mRNA, clone: NFR1_10_09, 3' end sequence, expressed in fruit.
HX739228.1:650-672
TTGCTCGGGTCCTTGAGGAACTCCTTGACT650TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGACACTGCCAACACGTT
Pyrus pyrifolia mRNA, clone: NFR4_04_88, 5' end sequence, expressed in fruit.
HX754086.1:260-282
TTGCTCGGGTCCTTGAGGAACTCCTTGACT260TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGACACTGCCAACACGTT
TSA: Pyrus communis mRNA, contig: lc27504.
FX635802.1:70-92
CTTGCTTNATCCTGCTGAAACTCCTTGACC70TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATGAAACTGCCAATACGTTC
TSA: Pyrus x bretschneideri Unigene41076_XinShao mRNA sequence.
JR632726.1:342-364
TTGCTCGGGTCCTTGAGGAACTCCTTGACT342TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGACACTGCCAACACGTT
TSA: Pyrus x bretschneideri Unigene41077_XinShao mRNA sequence.
JR632727.1:512-534
TTGCTTGGGTCCTTGAGAAACTCCTTGACC512TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:37574549-37574571
TAGCACAGTACCTTGAGGAACTCCTTGACT37574549TTCTCTGCTTGTGGGAAGGAATATTCGGTGACAATAGAAACTGCCAAAACATT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:27009314-27009336
TAGCACAGTACCTTGAGGAACTCCTTGACT27009314TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:25224957-25224979
TAGCACAGTACCTTGAGGAACTCCTTGACT25224957TTCTCTGCTTGTGGGAAGGAATATTCGGTGACAATAGAAACTGCCAAAACATT
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141959.1:30024449-30024471
TAGCACAATACCTTGAGAAACTCCTTGACC30024449TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:26836208-26836230
TAGCACAGTACCTTGAGGAACTCCTTGACT26836208TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:28845660-28845682
TAGCACAATACCTTGAGAAACTCCTTGACC28845660TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:26600174-26600196
TAGCACAGTACCTTGAGGAACTCCTTGACT26600174TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:28504347-28504369
TAGCACAATACCTTGAGAAACTCCTTGACC28504347TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:23260487-23260509
TAGCACAGTACCTTGAGGAACTCCTTGACT23260487TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Malus sylvestris genome assembly, chromosome: 7.
OU696509.1:28891796-28891818
TAGCACAATACCTTGAGAAACTCCTTGACC28891796TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Malus domestica genome assembly, chromosome: 1.
OU696677.1:23256853-23256875
TAGCACAGTACCTTGAGGAACTCCTTGACT23256853TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Malus domestica genome assembly, chromosome: 7.
OU696683.1:28166974-28166996
TAGCACAATACCTTGAGAAACTCCTTGACC28166974TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Malus domestica genome assembly, chromosome: 1.
OU744542.1:27072870-27072892
TAGCACAGTACCTTGAGGAACTCCTTGACT27072870TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Malus domestica genome assembly, chromosome: 7.
OU744548.1:29404662-29404684
TAGCACAATACCTTGAGAAACTCCTTGACC29404662TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Malus domestica genome assembly, chromosome: 1.
OU744953.1:26355053-26355075
TAGCACAGTACCTTGAGGAACTCCTTGACT26355053TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Malus domestica genome assembly, chromosome: 7.
OU744959.1:28267314-28267336
TAGCACAATACCTTGAGAAACTCCTTGACC28267314TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Malus domestica genome assembly, chromosome: 1.
OU744991.1:23527102-23527124
TAGCACAGTACCTTGAGGAACTCCTTGACT23527102TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAAAACATT
Malus domestica genome assembly, chromosome: 7.
OU744997.1:28581524-28581546
TAGCACAATACCTTGAGAAACTCCTTGACC28581524TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Crataegus laevigata genome assembly, chromosome: 10.
OY756947.1:31083769-31083791
TACCACAATACCTTGAGAAACTCCTTAACC31083769TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAACACGTT
Pyrus communis genome assembly, chromosome: 5.
OY757072.1:24180172-24180194
TAGCACAATACCTTGAGAAACTCCTTGACC24180172TTCTCTGCTTGTGGGAAGGAATATTCGGTGGCAATAGAAACTGCCAATACGTT
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH067_03009m, 5' end sequence.
AB450737.1:227-249
AACGTGTTGGCAGTGTCTATTGCCACCGAA227TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
000917AALA004339HT (AALA) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALA004339, mRNA sequence.
CN863254.1:63-85
AACGTGTTGGCAGTTTCTATTGCCACCGAA63TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
000817AALB001178HT (AALB) Royal Gala 150 DAFB fruit cortex Malus domestica cDNA clone AALB001178, mRNA sequence.
CN865573.1:105-127
AACGTGTTGGCAGTTTCTATTGCCACCGAA105TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010513AAXA001127HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA001127, mRNA sequence.
CN890579.1:243-265
AACGTGTTGGCAGTTTCTATTGCCACCGAA243TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010513AAXA001162HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA001162, mRNA sequence.
CN890602.1:243-265
AACGTGTTGGCAGTTTCTATTGCCACCGAA243TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010530AAXA004250HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA004250, mRNA sequence.
CN891303.1:243-265
AACGTGTTGGCAGTTTCTATTGCCACCGAA243TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010701AAZA003902HT (AAZA) M9 xylem Malus domestica cDNA clone AAZA003902, mRNA sequence.
CN897909.1:387-409
AACGTGTTGGCAGTTTCTATTGCCACCGAA387TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
000605AENA002371HT (AENA) Northern Spy expanding leaf Malus domestica cDNA clone AENA002371, mRNA sequence.
CN925927.1:131-153
AATGTTTTGGCAGTTTCTATTGCCACCGAA131TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
010615AVBC002877HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC002877, mRNA sequence.
CN938375.1:224-246
AACGTGTTGGCAGTTTCTATTGCCACCGAA224TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010616AVBC004353HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC004353, mRNA sequence.
CN938935.1:304-326
AACGTGTTGGCAGTTTCTATTGCCACCGAA304TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010616AVBC004355HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC004355, mRNA sequence.
CN938936.1:304-326
AACGTGTTGGCAGTTTCTATTGCCACCGAA304TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
010616AVBC004814HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC004814, mRNA sequence.
CN939133.1:133-155
AACGTGTTGGCAGTTTCTATTGCCACCGAA133TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
020805AVBC012059HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC012059, mRNA sequence.
CN947913.1:223-245
AACGTGTTGGCAGTTTCTATTGCCACCGAA223TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
020805AVBC012060HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC012060, mRNA sequence.
CN947914.1:223-245
AACGTGTTGGCAGTTTCTATTGCCACCGAA223TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
020731AVBC008558HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC008558, mRNA sequence.
CN949190.1:132-154
AACGTGTTGGCAGTTTCTATTGCCACCGAA132TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
Mdfr3003k20.y1 Mdfr Malus domestica cDNA clone Mdfr3003k20 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CN995855.2:110-132
AATGTTTTGGCAGTTTCTATTGCCACCGAA110TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
Mdfrt3036h24.y1 Mdfrt Malus domestica cDNA clone Mdfrt3036h24 5' similar to SW:RLA0_SOYBN P50346 60S ACIDIC RIBOSOMAL PROTEIN P0. [1], mRNA sequence.
CO419175.1:187-209
AACGTGTTGGCAGTTTCTATTGCCACCGAA187TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
TSA: Pyrus pyrifolia mRNA, contig: contig_5295.
FX394975.1:853-875
AACGTGTTGGCAGTGTCTATTGCCACCGAA853TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
TSA: Pyrus pyrifolia mRNA, contig: contig_8704revcomp.
FX411922.1:111-133
AACGTGTTGGCAGTGTCTATTGCCACCGAA111TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
TSA: Pyrus communis mRNA, contig: lc685.
FX609272.1:396-418
AACGTGTTGGCAGTATGTATTGCCACCGAA396TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
TSA: Pyrus communis mRNA, contig: lc3499.
FX612086.1:290-312
AACGTATTGGCAGTTTCTATTGCCACCGAA290TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGATCCAAGCAA
TSA: Pyrus communis mRNA, contig: lc8131.
FX616716.1:336-358
AACGTATTGGCAGTTTCTATTGCCACCGAA336TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGACCCAAGCAA
TSA: Pyrus communis mRNA, contig: lc18597.
FX627133.1:167-189
AACGTGTTGGCAGTATGTATTGCCACCGAA167TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
TSA: Pyrus communis mRNA, contig: lc26869.
FX635194.1:227-249
AACGTGTTGGCAGTATGTATTGCCACCGAA227TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGACCCGAGCAA
TSA: Pyrus communis mRNA, contig: lc29520.
FX637734.1:32-54
TAGTTAGGACAAGTATGTATTGCCACCGAA32TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTAAGGACCCGAGCAAG
TSA: Pyrus communis mRNA, contig: lc44969.
FX651709.1:211-233
AACGTGTTGGCAGTATGTATTGCCACCGAA211TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCATGGACCCGAGCAA
TSA: Pyrus communis mRNA, contig: lc45183.
FX651892.1:204-226
AACGTATTGGCAGTTTCTATTGCCACCGAA204TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGATCCAAGCAA
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141916.1:7345223-7345245
AACGTGTTGGCAGTTTCTATTGCCACCGAA7345223TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGTATTGTGCTA
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:7409443-7409465
AACGTGTTGGCAGTTTCTATTGCCACCGAA7409443TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTTCTCAAGGTATTGTGCTA
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:6985796-6985818
AATGTTTTGGCAGTTTCTATTGCCACCGAA6985796TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGTACTGTGCTA
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:7259183-7259205
AACGTGTTGGCAGTGTCTATTGCCACCGAA7259183TATTCCTTCCCACAAGCAGAGAAGGTCAAGGAGTTCCTCAAGGTATTGTGCTA
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:5484937-5484959
AACGTGTTGGCAGTATGTATTGCCACCGAA5484937TATTCCTTCCCACAAGCAGAGAAAGTCAAGGAGTTCCTCAAGGTACTGTGCTA
Euplexia lucipara genome assembly, chromosome: 15.
OV179157.1:1124920-1124942
ATTTGATCAAAACTAATGCATAAAAAAGCG1124920TATTCCTTCCCACAAGCAGAGAACTGAGCTCGATCCTTACCAACTTTCGATCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCTCTGCTTGTGGGAAGGAATA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTCTGCTTGTGGGAAGGAATA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.676 | 0.667 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTCTGCTTGTGGGAAGGAATA&k=0&no_gap=0&offset=0&limit=50
1.226 | 0.550 | search_minus_done; http://172.18.8.135:50400/match?q=TATTCCTTCCCACAAGCAGAGAA&k=0&no_gap=0&offset=0&limit=17
1.248 | 0.022 | cgi_end;

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