GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 05:40:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CBTN7091.g1_F21.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusilla cDNA, mRNA sequence.
EY158408.1:279-298
ATCAATGTTGCAGCAACATGGCATCCAATC279TTCTCTTTCTCGCAGCATGTTTTAATTTCTCGAGAGCTACAAGTCCCACT
TSA: Allium cepa CUDHLF2_5316 mRNA sequence.
JR848134.1:728-747
AGTGGGGCTCGTAGCCTTGGAGAAGCTGAA728ACATGCTGCGAGAAAGAGAAGATTAGATGCAATGCTTGTGAAACATTGAG
Allium cepa genome assembly, chromosome: 7.
LR994635.1:152924232-152924251
AGTGGGGCTCGTAGCCTTGGAGAAGCTGAA152924232ACATGCTGCGAGAAAGAGAAGATTAGATGCAATGCTTGTGAAACATTGAG
Chenopodium album genome assembly, chromosome: 19.
OX419226.1:42464069-42464088
GGTTGGATTAGTCGCGTTGGAGAAACTAAA42464069ACATGCTGCGAGAAAGAGAAAGATGGATGCCTTGTTGGTGAAACACTAGT
Incurvaria masculella genome assembly, chromosome: 17.
OX335657.1:13883184-13883203
CTGAATACGAGTGTTAGATCTTTATTATAA13883184ACATGCTGCGAGAAAGAGAAGGATCATGCGTAAATAATATTTAGTCTGGT
Sepiola atlantica genome assembly, chromosome: 22.
OY744536.1:89786780-89786799
GCACTAATAATGCACATAAAAAAAACATTG89786780ACATGCTGCGAGAAAGAGAAAAAGTAGACACAATTGCTAATGGCACATGC
Aspidapion aeneum genome assembly, chromosome: 4.
OY755041.1:123920673-123920692
ATCAGGTGCAATTCCAGATGCAGCAATGAT123920673ACATGCTGCGAGAAAGAGAAGACAGAGAGCGAGAGAGATGGGAGATTTCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCTCTTTCTCGCAGCATGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTCTTTCTCGCAGCATGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.154 | 0.145 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTCTTTCTCGCAGCATGT&k=0&no_gap=0&offset=0&limit=50
0.178 | 0.024 | search_minus_done; http://172.18.8.135:50400/match?q=ACATGCTGCGAGAAAGAGAA&k=0&no_gap=0&offset=0&limit=49
0.182 | 0.004 | cgi_end;

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