GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 08:35:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Arachis hypogaea Ahy.Unigene12473 mRNA sequence.
JR552778.1:923-942
CTCTTCAACATTATCTTCATCCCACTGATA923TTCTTCATCTCCTTCGGAGCTACTAGAATGCTTCCTTCTCTGCTTACGCT
Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:118692538-118692557
CTCTTCAACATTATCTTCATCCCACTGATA118692538TTCTTCATCTCCTTCGGAGCTACTAGAAAGCTTCCTTCTCTGCTTACGCT
Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:118620191-118620210
CTCTTCAACATTATCTTCATCCCACTGATA118620191TTCTTCATCTCCTTCGGAGCTACTAGAAAGCTTCCTTCTCTGCTTACGCT
Aegilops umbellulata cultivar TA1851 chromosome 3U.
CP136056.1:456944091-456944110
TCAATTGGATTCTCAAGAGAGCTTGTCAAT456944091TTCTTCATCTCCTTCGGAGCTGAAGGTTCTGATGAAGTTGATGCTTTCCC
Triticum monococcum genome assembly, chromosome: 1A.
OY737858.1:260047910-260047929
TCAATCGGATGCTCAAAAGAGCTGGTCAAT260047910TTCTTCATCTCCTTCGGAGCTGAAGATTCTGATGAATTTGATGCTTTCCT
TSA: Saussurea involucrata Unigene10340_SAUriwTARAAPEI-1, mRNA sequence.
JW905731.1:1181-1200
AACGAAAAGGAAGGAGGAAAATGTCGAGTA1181GCTCCGAAGGAGATGAAGAATATCACTGGGACGAGGAAAATGCCGAAGAG
TP_ABa0007F01.r TP_ABa Trifolium pratense genomic clone TP_ABa0007F01 3', genomic survey sequence.
HR239820.1:523-542
AACGTAAGCAGAGAAGGAAGCATTCTAGTA523GCTCCGAAGGAGATGAAGAATATCAATGGGATGATGATAATGTAGAAGAG
Trifolium pratense mRNA for aminoacyl-tRNA synthetase, complete cds.
AB234882.1:1670-1689
AACGTAAGCAGAGAAGGAAGCATTCTAGTA1670GCTCCGAAGGAGATGAAGAATATCAATGGGATGATGATAATGTAGAAGAG
Arachis hypogaea cultivar Shitouqi chromosome A01.
CP030983.1:111278232-111278251
AGCGTAAGCAGAGAAGGAAGCATTCTAGTA111278232GCTCCGAAGGAGATGAAGAATATCAGTGGGATGAAGATAATGTCGAAGAG
Aegilops umbellulata cultivar TA1851 chromosome 7U.
CP136060.1:123968470-123968489
TGCGGAGCATCAACTTCATCAGATTCCTCA123968470GCTCCGAAGGAGATGAAGAAATTGACTAGCTCTTTGGAGAACCCAATTGA
Triticum aestivum genome assembly, chromosome: 4B.
LR862518.1:553521589-553521608
CTGAAGGAGCTGGCCAAGCTGCACGAGCAT553521589GCTCCGAAGGAGATGAAGAATATGTCCAAAGCCTTATGGCCTTCCGACCT
Triticum aestivum genome assembly, chromosome: 4B.
LR862560.1:555940498-555940517
CTGAAGGAGCTGGCCAAGCTGCACGAGCAT555940498GCTCCGAAGGAGATGAAGAATATGTCCAAAGCCTTATGGCCTTCCGACCT
Triticum aestivum genome assembly, chromosome: 4B.
LR865468.1:551097794-551097813
CTGAAGGAGCTGGCCAAGCTGCACGAGCAT551097794GCTCCGAAGGAGATGAAGAATATGTCCAAAGCCTTATGGCCTTCCGACCT
Triticum aestivum genome assembly, chromosome: 4B.
LR865510.1:548264847-548264866
CTGAAGGAGCTGGCCAAGCTGCACGAGCAT548264847GCTCCGAAGGAGATGAAGAATATGTCCAAAGCCTTATGGCCTTCCGACCT
Triticum aestivum genome assembly, chromosome: 4B.
LR878445.1:551020799-551020818
CTGAAGGAGCTGGCCAAGCTGCACGAGCAT551020799GCTCCGAAGGAGATGAAGAATATGTCCAAAGCCTTATGGCCTTCCGACCT
Allium cepa genome assembly, chromosome: 7.
LR994635.1:13890056-13890075
ATAGTACTAGATCTTAACAATAATAGAGAG13890056GCTCCGAAGGAGATGAAGAAGTTAAAAATGCTTCCGCTTACATTCAACAG
Triticum aestivum genome assembly, chromosome: 4B.
LS992090.1:553702868-553702887
CTGAAGGAGCTGGCCAAGCTGCACGAGCAT553702868GCTCCGAAGGAGATGAAGAATATGTCCAAAGCCTTATGGCCTTCCGACCT
Triticum aestivum genome assembly, chromosome: 4B.
OU015731.1:568904650-568904669
CTGAAGGAGCTGGCCAAGCTGCACGAGCAT568904650GCTCCGAAGGAGATGAAGAATATGTCCAAAGCCTTATGGCCTTCCGACCT
Triticum aestivum genome assembly, chromosome: 4B.
OX637235.1:482717728-482717747
CTGAAGGAGCTGGCCAAGCTGCACGAGCAT482717728GCTCCGAAGGAGATGAAGAATATGTCCAAAGCCTTATGGCCTTCCGACCT
Arctium minus genome assembly, chromosome: 12.
OX941091.1:30068560-30068579
AACGAAAAGGAAGGAGGAAAATGTCCAGTA30068560GCTCCGAAGGAGATGAAGAATATCATTGGGACGAAGAAAATGCCGAAGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCTTCATCTCCTTCGGAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTTCATCTCCTTCGGAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.134 | 0.125 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTTCATCTCCTTCGGAGC&k=0&no_gap=0&offset=0&limit=50
0.223 | 0.088 | search_minus_done; http://172.18.8.135:50400/match?q=GCTCCGAAGGAGATGAAGAA&k=0&no_gap=0&offset=0&limit=45
0.233 | 0.010 | cgi_end;

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