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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 03:03:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR1AG91JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EV530504.1:417-438
GTTACAATCTCGTCAGGTACCGCATCTGTC417TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR1AT44JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EV531355.1:366-387
GTTACAATCTCGTCAGGTACCGCATCTGTC366TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR2AF79JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV540677.1:58-79
GTTACAATCTCGTCAGGGACCGCATCTGCC58TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR3BB26JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV546884.1:409-430
GTTACAATCTCGCCAGGTACCGCATCTGCC409TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RS1AF92JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW720310.1:369-390
GTTACAATCTCGTCAGGTACCGCATCTGCC369TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RS1B909JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW720920.1:322-343
GTTACAATCTCGTCAGGTACCGCATCTGCC322TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RS1AV17JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW722007.1:320-341
GTTACAATCTCGTCAGGTACCGCATCTGTC320TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RS3B918JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW739498.1:370-391
GTTACAATCTCGTCAGGTACCGCATCTGCC370TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR1C169JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EX751710.1:128-149
GTTACAATCTCGTCAGGTACCGCATCTGTC128TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR4CK62JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EX776721.1:387-408
GTTACAATCTCGTCAGGTACCGCATCTGCC387TTCTTCTTGAGCCCATCAAGTGCTTCCGAAACCTTCTTCATCCGTGTGCGGG
RR1D373JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY893420.1:389-410
GTTACAATCTCGTCAGGTACCGCATCTGTC389TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR1EC60JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY896431.1:454-475
GTTACAATCTCGTCAGGTACCGCATCTGTC454TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR3D973JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY909872.1:424-445
GTTACAATCTCGTCAGGTACCGCATCTGCC424TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR4DF31JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY918388.1:346-367
GTTACAATCTCGTCAGGTACCGCATCTGCC346TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACTTTTTTCATCCGTGTGCGGG
RR4DJ36JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY918686.1:343-364
GTTACAATCTCGTCAGGTACCGCATCTGCC343TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACTTTTTTCATCCGTGTGCGGG
RS1DL02JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EY927319.1:341-362
GTTACAATCTCGTCAGGTACTGCATCTGTC341TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR1EP15JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD529179.1:329-350
GTTACAATCTCGTCAGGTACCGCATCTGTC329TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR2FM76JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD539365.1:345-366
GTTACAATCTCGTCAGGTACCGCATCTGCC345TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RS2FU91JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD575574.1:392-413
GTTACAATCTCGTCAGGGACCGCATCTGCC392TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR1GG95JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD959860.1:384-405
GTTACAATCTCGTCAGGTACCGCATCTGTC384TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR1GK49JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD960075.1:343-364
GTTACAATCTCGTCAGGTACCGCATCTGCC343TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR1H325JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD961282.1:384-405
GTTACAATCTCGTCAGGTACCGCATCTGTC384TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR3G827JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD975211.1:416-437
GTTACAATCTCGTCAGGTACTGCATCTGTC416TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR3GK17JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD976040.1:387-408
GTTACAATCTCGTCAGGTACTGCATCTGTC387TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR3GP94JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD976429.1:41-62
GTTACAATCTCGTCAGGTACTGCATCTGTC41TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_367.
FX676759.1:245-266
GTTACAATCTCGTCAGGTACCGCATCTGCC245TTCTTCTTGAGCCCATCAAGTGCTTCCAAAACCTTCTTCATCCGTGTGCGGG
RR1AG91TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV525879.1:378-399
CCCGCACACGGATGAAGAAGGTTTTGGAAG378CACTTGATGGGCTCAAGAAGAAGACAGATGCGGTACCTGACGAGATTGTAAC
RR2AF79TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV536165.1:203-224
CCCGCACACGGATGAAGAAGGTTTTGGAAG203CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
RR3BB26TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV551853.1:374-395
CCCGCACACGGATGAAGAAGGTTTTGGAAG374CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGGCGAGATTGTAAC
RR4A424TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV565797.1:404-425
CCCGCACACGGATGAAAAAAGTTTTGGAAG404CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
RS1AF92TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW715638.1:391-412
CCCGCACACGGATGAAGAAGGTTTTGGAAG391CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
RS1B909TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW716698.1:140-161
CCCGCACACGGATGAAGAAGGTTTTGGAAG140CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
RS1AV17TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW718261.1:351-372
CCCGCACACGGATGAAGAAGGTTTTGGAAG351CACTTGATGGGCTCAAGAAGAAGACAGATGCGGTACCTGACGAGATTGTAAC
RS3B918TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW735400.1:352-373
CCCGCACACGGATGAAGAAGGTTTTGGAAG352CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
RR1CB44TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX748404.1:384-405
CCCGCACACGGATGAAGAAGGTTTTGGAAG384CACTTGATGGGCTCAAGAAGAAGACAGATGCGGTACCTGACGAGATTGTAAC
RR4CJ04TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX772729.1:383-404
CCCGCACACGGATGAAGAAGGTTTTGGAAG383CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
RR4CK62TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX772861.1:408-429
CCCGCACACGGATGAAGAAGGTTTCGGAAG408CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
RR1D373TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY896997.1:376-397
CCCGCACACGGATGAAGAAGGTTTTGGAAG376CACTTGATGGGCTCAAGAAGAAGACAGATGCGGTACCTGACGAGATTGTAAC
RR1EC60TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY901026.1:378-399
CCCGCACACGGATGAAGAAGGTTTTGGAAG378CACTTGATGGGCTCAAGAAGAAGACAGATGCGGTACCTGACGAGATTGTAAC
RR3D973TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY913678.1:389-410
CCCGCACACGGATGAAGAAGGTTTTGGAAG389CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
RR4DB23TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY922063.1:392-413
CCCGCACACGGATGAAGAAGGTTTTGGAAG392CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
RR4DF31TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY922422.1:437-458
CCCGCACACGGATGAAAAAAGTTTTGGAAG437CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
RR4DJ36TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY922782.1:417-438
CCCGCACACGGATGAAAAAAGTTTTGGAAG417CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
RS1DL02TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY931329.1:378-399
CCCGCACACGGATGAAGAAGGTTTTGGAAG378CACTTGATGGGCTCAAGAAGAAGACAGATGCAGTACCTGACGAGATTGTAAC
RS3D830TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EY946838.1:334-355
CCCGCACACGGATGAAGAAGGTTTTGGAAG334CACTTGATGGGCTCAAGAAGAAGACAGATGCAGTACCTGACGAGATTGTAAC
RR1EP15TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD532820.1:403-424
CCCGCACACGGATGAAGAAGGTTTTGGAAG403CACTTGATGGGCTCAAGAAGAAGACAGATGCGGTACCTGACGAGATTGTAAC
RR2F867TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD542408.1:396-417
CCCGCACACGGATGAAGAAGGTTTTGGAAG396CACTTGATGGGCTCAAGAAGAAGACAGATGCAGTACCTGACGAGATTGTAAC
RR2FM76TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD543566.1:373-394
CCCGCACACGGATGAAGAAGGTTTTGGAAG373CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
RS2FU91TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD571809.1:406-427
CCCGCACACGGATGAAGAAGGTTTTGGAAG406CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
RS2GJ90TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD947175.1:382-403
CCCGCACACGGATGAAGAAGGTTTTGGAAG382CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8487.
FX792877.1:411-432
CCCGCACACGGATGAAGAAGGTTTTGGAAG411CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
TSA: Raphanus sativus RS22413 mRNA sequence.
JT806960.1:373-394
CCCGCACACGGATGAAGAAGGTTTTGGAAG373CACTTGATGGGCTCAAGAAGAAGGCAGATGCGGTACCTGACGAGATTGTAAC
Brassica rapa genome, scaffold: A03.
LR031572.1:17668636-17668657
TTGTTACTTATACTAAACAGGTTTTGGAAG17668636CACTTGATGGGCTCAAGAAGAAAGCAGAAGCGCAACCAGATGAGATCGTTAC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:3898570-3898591
CAAACATATATGCTAAACAGGTTTTGGAAG3898570CACTTGATGGGCTCAAGAAGAAGACAGATGCGGTACCTGACGAGATTGTAAC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:17795534-17795555
TTGTTACTTATACTAAACAGGTTTTGGAAG17795534CACTTGATGGGCTCAAGAAGAAAGCAGAAGCGCAACCAGATGAGATCGTTAC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:3898570-3898591
CAAACATATATGCTAAACAGGTTTTGGAAG3898570CACTTGATGGGCTCAAGAAGAAGACAGATGCGGTACCTGACGAGATTGTAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCTTCTTGAGCCCATCAAGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTTCTTGAGCCCATCAAGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.634 | 1.625 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTTCTTGAGCCCATCAAGTG&k=0&no_gap=0&offset=0&limit=50
3.006 | 1.372 | search_minus_done; http://172.18.8.135:50400/match?q=CACTTGATGGGCTCAAGAAGAA&k=0&no_gap=0&offset=0&limit=24
3.026 | 0.020 | cgi_end;

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