GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 16:10:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Onychomys leucogaster genome assembly, chromosome: 2.
OX460372.1:102704808-102704827
TAGGAAAGGTGAGATATAGAAAATGCTTTC102704808TTCTTGCCCTTTCTCTGTGGCTGTTTTGTGGTCAGGATTTGTGTCTTAAA
Xenopus tropicalis clone ISB-362P17, complete sequence.
AC149162.3:51416-51435
AGAAACTATGTGCTGCCTTTCAATTCCATT51416TTCTTGCCCTTTCTCTGTGGAAACCTTATGATCCAGACTTTTTTGCTCAC
Lotus japonicus genomic DNA, chromosome 5, clone: LjT30D08, TM0551.
AP007427.2:57742-57761
AGTGACCATTGTTTTGAATCTAAGAACTCA57742TTCTTGCCCTTTCTCTGTGGTTTACTTTACCAATCATTTTCTAGAACCTC
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:76121744-76121763
AGTGACCATTGTTTTGAATCTAAGAACTCA76121744TTCTTGCCCTTTCTCTGTGGTTTACTTTACCAATCATTTTCTAGAACCTC
Arachis hypogaea cultivar Shitouqi chromosome B03.
CP030995.1:46302081-46302100
CCCTACCGTTTTCTCTGCGAGATCGGCTTC46302081TTCTTGCCCTTTCTCTGTGGTGTTCTTGTCGTGGCCGGCTCCTCCTTCTC
Arachis ipaensis cultivar K30076 chromosome 03.
CP049894.1:46912970-46912989
CCCTACCGTTTTCTCTGCGAGATCGGCTTC46912970TTCTTGCCCTTTCTCTGTGGTGTTCTTGTCGTGGCCGGCTCCTCCTTCTC
Scutellaria galericulata genome assembly, chromosome: 8.
OX335791.1:1329618-1329637
CAGCAAACATTTTCTTCTGTTCTTCAAGCC1329618TTCTTGCCCTTTCTCTGTGGATAGCAGCTTTTTGCTTGTCATCAAAGCCC
Scutellaria minor genome assembly, chromosome: 9.
OX940733.1:1202568-1202587
CAGCAAACATTTTCTTCTGTTCTTCAAGCC1202568TTCTTGCCCTTTCTCTGTGGATAGCAGCTTTCTGCTTGTCATCAAAGCCC
Xenopus tropicalis cDNA clone IMAGE:7683058.
BC125750.1:1421-1440
GTGAGCAAAAAAGTCTGGATCATAAGGTTT1421CCACAGAGAAAGGGCAAGAAAATGGAATTGAAAGGCAGCACATAGTTTCT
Geotrypetes seraphini genome assembly, chromosome: 7.
LR699152.1:173278305-173278324
GGCGCGCGTTTGTCTGTGAACCAAAAAAAT173278305CCACAGAGAAAGGGCAAGAATACATATTAAGGAATACAATGAAACCTCCT
JGI_XZT61253.fwd NIH_XGC_tropTad5 Xenopus tropicalis cDNA clone IMAGE:7635916 5', mRNA sequence.
CX339922.2:845-864
GTGAGCAAAAAAGTCTGGATCATAAGGTTT845CCACAGAGAAAGGGCAAGAAAATG
JGI_CAAM3042.fwd NIH_XGC_tropTe3 Xenopus tropicalis cDNA clone IMAGE:7676900 5', mRNA sequence.
CX890183.1:660-679
GTGAGCAAAAAAGTCTGGATCATAAGGTTT660CCACAGAGAAAGGGCAAGAAAATGGAATTGAAAGGCAGCACATAGTTTCT
JGI_CAAM14114.fwd NIH_XGC_tropTe3 Xenopus tropicalis cDNA clone IMAGE:7684180 5', mRNA sequence.
CX903136.1:659-678
GTGAGCAAAAAAGTCTGGATCATAAGGTTT659CCACAGAGAAAGGGCAAGAAAATGGAATTGAAAGGCAGCACATAGTTTCT
Lotus japonicus genomic DNA, chromosome 4, clone: LjT07K08, TM0046b.
AP004519.1:20452-20471
GAGGTTCTAGAAAATGATTGGTAAAGTAAA20452CCACAGAGAAAGGGCAAGAATGAGTTCTTAGATTCAAAACAATGGTCACT
Lotus japonicus genomic DNA, chromosome 4, clone: LjT41M05, TM0404.
AP006697.1:43257-43276
GAGGTTCTAGAAAATGATTGGTAAAGTAAA43257CCACAGAGAAAGGGCAAGAATGAGTTCTTAGATTCAAAACAATGGTCACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCTTGCCCTTTCTCTGTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTTGCCCTTTCTCTGTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTTGCCCTTTCTCTGTGG&k=0&no_gap=0&offset=0&limit=50
0.256 | 0.162 | search_minus_done; http://172.18.8.135:50400/match?q=CCACAGAGAAAGGGCAAGAA&k=0&no_gap=0&offset=0&limit=42
0.261 | 0.005 | cgi_end;

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