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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 05:44:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mdfb8005E17.g1 Apple_EST_Mdfb Malus domestica cDNA similar to ref|NP_568154.1| chalcone-flavanone isomerase family [Arabidopsis thaliana] ref|NP_850770.1| chalcone-flavanone isomerase family [Arabidop
DT001537.1:514-535
AGCAAGTGAGTTAACTAAGTGAATGTCTGG514TTCTTGGGACTTATGGGATGTTACTGTTTGCAACCGCAAGGCTCGTTTTGAA
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:5752854-5752875
AGCAAGTGAGTTAACTAAGTGAATGTCTGG5752854TTCTTGGGACTTATGGGATGTTACTGTTTGCAACCGCAAGGCTCGTTTTGAA
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:5949018-5949039
AGCAAGTGAGTTAACTAAGTGAATGTCTAG5949018TTCTTGGGACTTATGGGATGTTACTGTTTGAATTGCAAGGCTCGTTTTGAAA
Mdfrfu3511N20_e5698.g1 Apple_EST_Mdfrfu Malus domestica cDNA 5' similar to ref|NP_568154.1| chalcone-flavanone isomerase family [Arabidopsis thaliana] ref|NP_850770.1| chalcone-flavanone isomerase fam
GO538246.1:132-153
TTCAAAACGAGCCTTGCGGTTGCAAACAGT132AACATCCCATAAGTCCCAAGAACCAGACATTCACTTAGTTAACTCACTTGCT
Pyrus pyrifolia mRNA, clone: NFW2_19_92, 5' end sequence, expressed in flower bud.
HX763534.1:117-138
TTTCAAAACGAGCCTTGCAATTCAAACAGT117AACATCCCATAAGTCCCAAGAACTAGACATTCACTTAGTTAACTCACTTGCT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:38684048-38684069
TTCAAAACGAGCCTTGCGGTTGCAAACAGT38684048AACATCCCATAAGTCCCAAGAACCAGACATTCACTTAGTTAACTCACTTGCT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:28084096-28084117
TTCAAAACGAGCCTTGCGGTTGCAAACAGT28084096AACATCCCATAAGTCCCAAGAACCAGACATTCACTTAGTTAACTCACTTGCT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:26495797-26495818
TTCAAAACGAGCCTTGCGGTTGCAAACAGT26495797AACATCCCATAAGTCCCAAGAACTAGACATTCACTTAGTTAACTCACTTGCT
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:24476672-24476693
TTCAAAACGAGCCTTGCGGTTGCAAACAGT24476672AACATCCCATAAGTCCCAAGAACCAGACATTCACTTAGTTAACTCACTTGCT
Malus domestica genome assembly, chromosome: 1.
OU696677.1:24546332-24546353
TTCAAAACGAGCCTTGCGGTTGCAAACAGT24546332AACATCCCATAAGTCCCAAGAACCAGACATTCACTTAGTTAACTCACTTGCT
Malus domestica genome assembly, chromosome: 1.
OU744542.1:28305853-28305874
TTCAAAACGAGCCTTGCGGTTGCAAACAGT28305853AACATCCCATAAGTCCCAAGAACCAGACATTCACTTAGTTAACTCACTTGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTCTTGGGACTTATGGGATGTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTCTTGGGACTTATGGGATGTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.143 | 0.134 | search_plus_done; http://172.18.8.135:50400/match?q=TTCTTGGGACTTATGGGATGTT&k=0&no_gap=0&offset=0&limit=50
0.345 | 0.203 | search_minus_done; http://172.18.8.135:50400/match?q=AACATCCCATAAGTCCCAAGAA&k=0&no_gap=0&offset=0&limit=47
0.351 | 0.005 | cgi_end;

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