GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 08:42:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB132J09F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB132J09, genomic survey sequence.
ED538850.1:97-116
TTGCAGTCGAAGCTGCACCCAACCTGAGTT97TTGAGCAGACCTACACACCGTTTACACCTTAAATATAATGCCCCTTAACC
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:58082861-58082880
TTTCAGTCGAAGCTGCACCCAACCTGAGTT58082861TTGAGCAGACCTACACACCGTTTACACCTTAAATATAATGCCCCTTAACC
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:6350207-6350226
TGTAAATCACTCTTATATTTAAGGTGTAAA6350207CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGCAA
Brassica napus genome assembly, chromosome: A02.
HG994356.1:6082758-6082777
GGTTAAGGGGCATTATATTTAAGGTGTAAA6082758CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGCAA
Brassica napus genome assembly, chromosome: C02.
HG994366.1:8579622-8579641
GGTTAAGGGGCATTATATTTAAGGTGTAAA8579622CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGAAA
Brassica rapa genome, scaffold: A02.
LR031573.1:5967952-5967971
TGTAAATCACTCTTATATTTAAGGTGTAAA5967952CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGCAA
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:10141148-10141167
GGTTAAGGGGCATTATATTTAAGGTGTAAA10141148CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGTAA
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:6137712-6137731
TGTAAATCACTCTTATATTTAAGGTGTAAA6137712CGGTGTGTAGGTCTGCTCAAAACTCAGGTTGGGTGCAGCTTCGACTGCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGAGCAGACCTACACACCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGAGCAGACCTACACACCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.114 | 0.106 | search_plus_done; http://172.18.8.135:50400/match?q=TTGAGCAGACCTACACACCG&k=0&no_gap=0&offset=0&limit=50
0.147 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=CGGTGTGTAGGTCTGCTCAA&k=0&no_gap=0&offset=0&limit=48
0.151 | 0.004 | cgi_end;

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