GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 00:05:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 19458 from patent US 7214786.
EA155143.1:481-504
GCAAGGTGAAGATACTCAAGGCCCCCAAGT481TTGATCTCGGGAAGCTCATGGAGGTTCATGGCGACTACAAGGAGGACGTGGGGG
Sequence 14656 from patent US 7834146.
GX746477.1:805-828
GCAAGGTGAAGATACTCAAGGCTCCCAAGT805TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
Sequence 14656 from patent US 8106174.
GZ089348.1:805-828
GCAAGGTGAAGATACTCAAGGCTCCCAAGT805TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
RHIZ1_26_A01.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA sequence.
AI724706.1:204-227
GCAAGGTGAAGATACTCAAGGCTCCCAAGT204TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGTG
WS1_16_H06.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence.
AW678569.1:407-430
GCAAGGTGAAGATACTCAAGGCTCCCAAGT407TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
PI1_34_B09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence.
BE366520.1:309-332
GCAAGGTGAAGATACTCAAGGCTCCCAAGT309TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
WS1_99_D04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence.
BE593246.1:222-245
GCAAGGTGAAGATACTCAAGGCTCCCAAGT222TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
WS1_99_D04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence.
BE593660.1:222-245
GCAAGGTGAAGATACTCAAGGCTCCCAAGT222TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
OV1_4_G09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence.
BE918513.1:367-390
GCAAGGTGAAGATACTCAAGGCTCCCAAGT367TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
FM1_13_A06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum cDNA, mRNA sequence.
BF422195.1:194-217
GCAAGGTGAAGATACTCAAGGCTCCCAAGT194TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGTG
FM1_71_D10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum cDNA, mRNA sequence.
BG050679.1:230-253
GCAAGGTGAAGATACTCAAGGCTCCCAAGT230TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGTG
RHIZ2_14_G07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA sequence.
BG052778.1:322-345
GCAAGGTGAAGATACTCAAGGCTCCCAAGT322TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGTG
RHIZ2_18_C12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA sequence.
BG103114.1:410-433
GCAAGGTGAAGATACTCAAGGCTCCCAAGT410TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGTG
EM1_77_B11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence.
BG649163.1:470-493
GCAAGGTGAAGATACTCAAGGCTCCCAAGT470TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
OV1_32_B11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence.
BG933591.1:426-449
GCAAGGTGAAGATACTCAAGGCTCCCAAGT426TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
PIC1_25_E08.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence.
BM328700.1:211-234
GCAAGGTGAAGATACTCAAGGCTCCCAAGT211TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
PIC1_45_E10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence.
BM329969.1:348-371
GCAAGGTGAAGATACTCAAGGCTCCCAAGT348TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
LEAF4_12_C12 pSL Saccharum hybrid cultivar CP72-2086 cDNA 5', mRNA sequence.
BQ533949.1:199-222
GCAAGGTGAAGATACTCAAGGCTCCCAAGT199TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCCCLR1068H05.g Saccharum officinarum mRNA (Nogueira,F.T.S) Saccharum hybrid cultivar SP80-3280 cDNA, mRNA sequence.
BU103659.1:85-108
GCAAGGTGAAGATACTCAAGGCTCCCAAGT85TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCQSAD1055G01.g AD1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCQSAD1055G01 5', mRNA sequence.
CA067577.1:189-212
GCAAGGTGAAGATACTCAAGGCTCCCAAGT189TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCEZAM2034H03.g AM2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCEZAM2034H03 5', mRNA sequence.
CA084778.1:234-257
GCAAGGTGAAGATACTCAAGGCTCCCAAGT234TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCSGAM2075E05.g AM2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCSGAM2075E05 5', mRNA sequence.
CA089486.1:230-253
GCAAGGTGAAGATACTCAAGGCTCCCAAGT230TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCSGHR1071C07.g HR1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCSGHR1071C07 5', mRNA sequence.
CA109467.1:540-563
GCAAAGTGAAGATACTCAAGGCTCCCAAGT540TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACCAAGAGGATGTGGGTG
SCCCLR1068H05.g LR1 Saccharum hybrid cultivar SP80-3280 cDNA clone SCCCLR1068H05 5', mRNA sequence.
CA120041.1:85-108
GCAAGGTGAAGATACTCAAGGCTCCCAAGT85TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCJLLR1106G10.g LR1 Saccharum hybrid cultivar SP80-3280 cDNA clone SCJLLR1106G10 5', mRNA sequence.
CA123247.1:376-399
GCAAGGTGAAGATACTCAAGGCTCCCAAGT376TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCBFRT1070D01.g RT1 Saccharum hybrid cultivar SP80-3280 cDNA clone SCBFRT1070D01 5', mRNA sequence.
CA131333.1:847-870
CCGCAGGTGGAGATACTCAGGGTTCCNAAG847TTGATCTCGGGAAGCTCATGGAGGTTCATTGTGACTACCAAGAGGAGGGGGTGT
SCCCRZ2C02B04.g RZ2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCCCRZ2C02B04 5', mRNA sequence.
CA150038.1:204-227
GCAAGGTGAAGATACTCAAGGCTCCCAAGT204TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCBFRZ2018B08.g RZ2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCBFRZ2018B08 5', mRNA sequence.
CA150462.1:178-201
GCAAGGTGAAGATACTCAAGGCTCCCAAGT178TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCJFRZ2015A07.g RZ2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCJFRZ2015A07 5', mRNA sequence.
CA152027.1:517-540
GCAAGGTGAAGATACTCAAGGCTCCCAAGT517TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCVPRZ2037B05.g RZ2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCVPRZ2037B05 5', mRNA sequence.
CA153884.1:85-108
GCAAGGTGAAGATACTCAAGGCTCCCAAGT85TTGATCTCGGGAAGCTCATGGAGGTAATTGCTACATGCATAGTAATAATTTTTC
SCEZRZ3101F07.g RZ3 Saccharum hybrid cultivar SP80-3280 cDNA clone SCEZRZ3101F07 5', mRNA sequence.
CA158971.1:507-530
GCAAGGTGAAGATACTCAAGGCTCCCAAGT507TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCRUSB1078C04.g SB1 Saccharum hybrid cultivar SP80-3280 cDNA clone SCRUSB1078C04 5', mRNA sequence.
CA170796.1:66-89
GCAAGGTGAAGATACTCAAGGCTCCCAAGT66TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCRUFL1024F12.g FL1 Saccharum hybrid cultivar (mixed) cDNA clone SCRUFL1024F12 5', mRNA sequence.
CA200544.1:423-446
GCAAGGTGAAGATACTCAAGGCTCCCAAGT423TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCCCCL7C04A05.g CL7 Saccharum hybrid cultivar cDNA clone SCCCCL7C04A05 5', mRNA sequence.
CA212945.1:375-398
GCAAGGTGAAGATACTCAAGGCTCCCAAGT375TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCRLFL4004E07.g FL4 Saccharum hybrid cultivar (mixed) cDNA clone SCRLFL4004E07 5', mRNA sequence.
CA225538.1:215-238
GCAAGGTGAAGATACTCAAGGCTCCCAAGT215TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCRLFL3009D03.g Saccharum officinarum FL3 Saccharum hybrid cultivar (mixed) cDNA clone SCRLFL3009D03 5', mRNA sequence.
CA226815.1:432-455
GCAAGGTGAAGATACTCAAGGCTCCCAAGT432TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAAAAGATGTGGGTG
SCCCRT3009E05.g RT3 Saccharum hybrid cultivar SP80-3280 cDNA clone SCCCRT3009E05 5', mRNA sequence.
CA258596.1:293-316
GCAAGGTGAAGATACTCAAGGCTCCCAAGT293TTGATCTCGGGAAGCTCATGGAGGTAATTGCTACATGCATAGTAATAATTTTTC
SCVPFL4C09B11.g FL4 Saccharum hybrid cultivar (mixed) cDNA clone SCVPFL4C09B11 5', mRNA sequence.
CA280714.1:535-558
GCAAGGTGAAGATACTCAAGGCTCCCAAGT535TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCEPSD2070H08.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCEPSD2070H08 5', mRNA sequence.
CA288191.1:358-381
GCAAGGTGAAGATACTCAAGGCTCCCAAGT358TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SCCCSD2C06H10.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCCCSD2C06H10 5', mRNA sequence.
CA301492.1:358-381
GCAAGGTGAAGATACTCAAGGCTCCCAAGT358TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
WHE4330_F03_K06ZS Wheat meiotic anther cDNA library Triticum aestivum cDNA clone WHE4330_F03_K06, mRNA sequence.
CA486365.1:481-504
GCAAGGTGAAGATACTCAAGGCTCCCAAGT481TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
HS1_41_B02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_41_B02_A012 3', mRNA sequence.
CD213453.1:244-267
GCAAGGTGAAGATACTCAAGGCTCCCAAGT244TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGTG
ETH1_3_E01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_3_E01_A002 3', mRNA sequence.
CD429217.1:364-387
GCAAGGTGAAGATACTCAAGGCTCCCAAGT364TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
PH1_15_D09.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor cDNA clone PH1_15_D09_A002 3', mRNA sequence.
CF428434.1:231-254
GCAAGGTGAAGATACTCAAGGCTCCCAAGT231TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
POL1_46_G01.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_46_G01_A002 3', mRNA sequence.
CF487849.1:439-462
GCAAGGTGAAGATACTCAAGGCTCCCAAGT439TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
MCSA035A11 Maturing Sugarcane Stem Lambda ZIPLOX Library (MCS) Saccharum hybrid cultivar Q117 cDNA clone MCSA035A11 5' similar to ribosomal protein, mRNA sequence.
CF572216.1:83-106
GCAAGGTGAAGATACTCAAGGCTCCCAAGT83TTGATCTCGGGAAGCTCATGGAGGTAATTGCTACATGCATAGTAATAATTTTTC
MCSA064F03 Maturing Sugarcane Stem Lambda ZIPLOX Library (MCS) Saccharum hybrid cultivar Q117 cDNA clone MCSA056D09 5' similar to ribosomal protein, mRNA sequence.
CF573036.1:208-231
GCAAGGTGAAGATACTCAAGGCTCCCAAGT208TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
DSAF1_38_E04.g1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_38_E04_A011 3', mRNA sequence.
CF758951.1:128-151
GCAAGGTGAAGATACTCAAGGCTCCCAAGT128TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
DSAF1_56_B06.b1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_56_B06_A011 5', mRNA sequence.
CF760153.1:95-118
GCAAGGTGAAGATACTCAAGGCTCCCAAGT95TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
DSAF1_80_G06.g1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_80_G06_A011 3', mRNA sequence.
CF761777.1:95-118
GCAAGGTGAAGATACTCAAGGCTCCCAAGT95TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
WOUND1_81_H09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_81_H09_A002 3', mRNA sequence.
CN152333.1:486-509
GCAAGGTGAAGATACTCAAGGCTCCCAAGT486TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAGGAGGATGTGGGGG
SUS03-011F-E07-051.b Sugarcane mature stem library Saccharum hybrid cultivar CoS 767 cDNA clone SUS03-011F-E07-051 5', mRNA sequence.
CN612030.1:130-153
GCAAGGTGAAGATACTCAAGGCTCCCAAGT130TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
SUS01-153-G03-A-022.b Sugarcane mature stem library Saccharum hybrid cultivar CoS 767 cDNA clone SUS01-153-G03-A-022 5', mRNA sequence.
DV735494.1:191-214
GCAAGGTGAAGATACTCAAGGCTCCCAAGT191TTGATCTCGGGAAGCTCATGGAGGTTCATGGTGACTACAAAGAGGATGTGGGTG
TSA: Elaeis guineensis isotig05496.Elguifruit mRNA sequence.
JO092749.1:697-720
GGAAGGTCAAGATACTGAAGGCCCCAAAAT697TTGATCTCGGGAAGCTCATGGAGGTTCATGGAGACTATAAGGAGGATGTGGGTG
TSA: Elaeis guineensis isotig05497.Elguifruit mRNA sequence.
JO092750.1:705-728
GGAAGGTCAAGATACTGAAGGCCCCAAAAT705TTGATCTCGGGAAGCTCATGGAGGTTCATGGAGACTATAAGGAGGATGTGGGTG
104_687_11213731_148_37378_072 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11213731, genomic survey sequence.
CW233972.1:302-325
GCAAGGTGAAGATACTCAAGGCTCCCAAGT302TTGATCTCGGGAAGCTCATGGAGGTAATTGCTACATGCATAGTTTAATTTTTCC
Elaeis guineensis clone estEgSNP77 40S ribosomal protein S3a-like protein (RPS3) mRNA, complete cds.
JX438721.1:718-741
GGAAGGTCAAGATACTGAAGGCCCCAAAAT718TTGATCTCGGGAAGCTCATGGAGGTTCATGGAGACTATAAGGAGGATGTGGGTG
Saccharum hybrid cultivar R570 cultivar R570 clone BAC 020D23, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
KF184805.1:100741-100764
GCAAGGTGAAGATACTCAAGGCTCCCAAGT100741TTGATCTCGGGAAGCTCATGGAGGTAATTGCTACATGCATAGTAATAATTTTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGATCTCGGGAAGCTCATGGAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGATCTCGGGAAGCTCATGGAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.311 | 1.302 | search_plus_done; http://172.18.8.135:50400/match?q=TTGATCTCGGGAAGCTCATGGAGG&k=0&no_gap=0&offset=0&limit=50
1.379 | 0.069 | search_minus_done; http://172.18.8.135:50400/match?q=CCTCCATGAGCTTCCCGAGATCAA&k=0&no_gap=0&offset=0&limit=0
1.379 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).