GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 14:08:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

MEUA135TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence.
GE348662.1:707-725
AGTGATGTTCTTCGTCAGACATGGTGTTGA707TTGATGCTTTCTCTGCGCGCGTGGGTAATGTGTTATGTGTGAGGAGAAA
MEUB805TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence.
GE351896.1:710-728
AGTGATGTTCTTCGTCAGACATGGTGTTGA710TTGATGCTTTCTCTGCGCGCGTCC
METCB44TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence.
GT143086.1:708-726
GTGATGTTCTTCGTCAGACATGGGTGTTGA708TTGATGCTTTCTCTGCGCGCGTGGGTCC
TSA: Medicago sativa cultivar Chilean F0D_7661 mRNA sequence.
JL874088.1:905-923
AAAGTGATGTTCTTCGTCAGACATGATTGA905TTGATGCTTTCTCTGCGCGCGTGGGTAATGTGTTATGTGTGAGGAGAAG
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_472 mRNA sequence.
JL881675.1:850-868
AAAGTGATGTTCTTCGTCAGACATGATTGA850TTGATGCTTTCTCTGCGCGCGTGGGTAATGTGTTATGTGTGAGGAGAAG
Medicago truncatula chromosome 8 clone mth2-23d6, complete sequence.
AC122160.21:14106-14124
AGTGATGTTCTTCGTCAGACATGGTGTTGA14106TTGATGCTTTCTCTGCGCGCGTGGGTAATGTGTTATGTGTGAGGAGAAA
Medicago truncatula clone MTYF1_F2_F3_F41G-C-5 unknown mRNA.
BT051284.1:748-766
AGTGATGTTCTTCGTCAGACATGGTGTTGA748TTGATGCTTTCTCTGCGCGCGTGGGTC
Medicago arabica genome assembly, chromosome: 5.
OX326968.1:60827012-60827030
GATGTTCTTCGTCAGACATGGTGTTGTTGA60827012TTGATGCTTTCTCTGCGCGTGGGTAATGTGTTATGTGTGAGGAGAAGAA
Sequence 174 from Patent WO2006060699.
CS644572.1:26-44
GCTCACACATAACACATTACCCACG26CGCGCAGAGAAAGCATCAATCAATCATGTCTGACGAAGAACATCACTTT
Sequence 174 from patent US 7663028.
GV649188.1:26-44
GCTCACACATAACACATTACCCACG26CGCGCAGAGAAAGCATCAATCAATCATGTCTGACGAAGAACATCACTTT
JP 2013135669-A/121: POLYNUCLEOTIDES OF DHA AND ISOFORMS OF EIF-5A AND METHODS OF USING SAME.
HW286931.1:26-44
GCTCACACATAACACATTACCCACG26CGCGCAGAGAAAGCATCAATCAATCATGTCTGACGAAGAACATCACTTT
T110463e KV0 Medicago truncatula cDNA clone pKV0-1G7, mRNA sequence.
AI974513.1:26-44
GGAATTCGGCACGAGATTACCCACG26CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
Medicago truncatula EST, clone mtgmadc120032b06.
AJ503271.1:10-28
GGACCCACG10CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
Medicago truncatula EST MtBA08B05F1 : T3 end of clone MtBA08B05 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL366468.1:3-21
CG3CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
M111109e DSIR Medicago truncatula cDNA clone IR197, mRNA sequence.
AW208076.2:17-35
GCACGAGGTACCCACG17CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
EST314693 DSIR Medicago truncatula cDNA clone pDSIR-24E18, mRNA sequence.
AW559701.1:13-31
GCATTACCCACT13CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
NF031E06NR1F1000 Nodulated root Medicago truncatula cDNA clone NF031E06NR 5', mRNA sequence.
AW685890.1:13-31
ACATTACCCACG13CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
EST335428 DSIL Medicago truncatula cDNA clone pDSIL-7L1, mRNA sequence.
AW776363.1:6-24
GAGGG6CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
NF023H05DT1F1045 Drought Medicago truncatula cDNA clone NF023H05DT 5', mRNA sequence.
BE248942.2:32-50
TTTCTCCTCACACATAACACATTACCCACG32CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
NF015H07PL1F1061 Phosphate starved leaf Medicago truncatula cDNA clone NF015H07PL 5', mRNA sequence.
BE324380.2:32-50
CACGAGCTCACACATAACACATTACCCACG32CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
EST457955 DSIL Medicago truncatula cDNA clone pDSIL-23J16, mRNA sequence.
BF520485.1:26-44
CCTCACACATAACACATTACCCACG26CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
NF075F02DT1F1026 Drought Medicago truncatula cDNA clone NF075F02DT 5', mRNA sequence.
BF634831.1:13-31
ACATTACCCACG13CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
NF110G07EC1F1055 Elicited cell culture Medicago truncatula cDNA clone NF110G07EC 5', mRNA sequence.
BF644469.1:32-50
TTTCTCCTCACACATAACACATTACCCACG32CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
EST486209 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-15J11 5' end, mRNA sequence.
BG584449.1:17-35
TAACACATTACCCACG17CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
EST488733 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-47G18 5' end, mRNA sequence.
BG586964.1:26-44
CCTCACACATAACACATTACCCACG26CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
NF097D10IN1F1090 Insect herbivory Medicago truncatula cDNA clone NF097D10IN 5', mRNA sequence.
BI267141.1:23-41
CACACATAACACATTACCCACG23CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
s13dSG16A0100001_139910 Glandular trichomes Medicago sativa cDNA, mRNA sequence.
CO513564.1:6-24
GGGGG6CGCGCAGAGAAAGCATCAATCAATCATGTCTGACGAAGAACATCACTTT
s13dNF53D09MJ075_246417 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX530191.1:34-52
ACGAGGCTCACACATAACACATTACCCACG34CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
s13dNF22E10MJ072_248437 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX531154.1:10-28
GGCACGAGG10CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
MHAM15C_E06_T3_039.seq MHAM2 Medicago truncatula/Glomus versiforme mixed EST library cDNA, mRNA sequence.
CX549473.1:32-50
CACCAGCTCACACATAACACATTACCCACG32CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
EST1224567 MTY Medicago truncatula cDNA clone MTYA745, mRNA sequence.
DW015606.1:17-35
CGGCCGGGGACCCACG17CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
MTYCT22TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence.
EV256134.1:9-27
GACCCACG9CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
MTYDS28TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence.
EV259114.1:12-30
GATTACCCACG12CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
MTYEY64TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence.
EV262678.1:12-30
GATTACCCACG12CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
ALF-R-6_2007-07-18_1/ALF(R)-6_K01_003_1 Alfalfa (Medicago sativa) Trichome isolated from the stem Medicago sativa cDNA, mRNA sequence.
EX525885.1:17-35
GGCNTTACGGCCGGGG17CGCGCAGAGAAAGCATCAATCAATCATGTCTGACGAAGAACATCANTTT
METB277TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
EY477421.1:10-28
GGACCCACG10CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
MEUA135TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence.
GE343442.1:57-75
TTTCTCCTCACACATAACACATTACCCACG57CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
MEUAC91TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence.
GE344443.1:24-42
GGACACATAACACATTACCCACG24CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
MEUB805TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence.
GE347506.1:6-24
GGACG6CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
METCB44TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
GT138573.1:10-28
GGACCCACG10CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
Medicago truncatula chromosome 8 clone mth2-29p8, complete sequence.
AC152068.17:45173-45191
TTTCTCCTCACACATAACACATTACCCACG45173CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT
Medicago sativa eukaryotic translation initiation factor 5A-2 mRNA, complete cds.
AF416338.1:27-45
TTCACTACTTACTCAGATTAAAGATG27CGCGCAGAGAAAGCATCAATCAATCATGTCTGACGAAGAACATCACTTT
Medicago truncatula clone MTYFP_FQ_FR_FS1G-O-14 unknown mRNA.
BT053533.1:12-30
GATTACCCACG12CGCGCAGAGAAAGCATCAATCAACACCATGTCTGACGAAGAACATCACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGATGCTTTCTCTGCGCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGATGCTTTCTCTGCGCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.403 | 0.394 | search_plus_done; http://172.18.8.135:50400/match?q=TTGATGCTTTCTCTGCGCG&k=0&no_gap=0&offset=0&limit=50
1.692 | 1.289 | search_minus_done; http://172.18.8.135:50400/match?q=CGCGCAGAGAAAGCATCAA&k=0&no_gap=0&offset=0&limit=42
1.715 | 0.023 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).