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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 05:48:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Paspalum notatum var. saurae isolate R1 chromosome 02.
CP144746.1:34752249-34752268
CGCCAACACTTCTGCATGGAGAGCATCAAG34752249TTGATGTCCCTCTTTCCTGCTCCTGCCTGCACAACACGCCCTTCTTGATC
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38557475-38557494
GTAGCTTCAGCTGCCTCCAGGGCCTTCACT38557475TTGATGTCCCTCTTTCCTGCAAGAGAGCACAAATAGGTCAAAATACTGAA
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38594213-38594232
GTAGCTTCAGCTGCTTCCAGGGCCTTCACT38594213TTGATGTCCCTCTTTCCTGCAAGAGAGCACAAATAGGTCAAAATACTAAT
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38650708-38650727
GTAGCTTCAGCTGCCTCCAGGGCCTTCACT38650708TTGATGTCCCTCTTTCCTGCAAGAGAGCACAAATAGGTCAAAATACTGAA
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:25624233-25624252
GCAGCTTCAGCTGCCTCCAGGGCCTTCACT25624233TTGATGTCCCTCTTTCCTGCAAGAGAGCACAACTAGGTCAAAATACTGAA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2483909-2483928
TTCAGTATTTTGACCTATTTGTGCTCTCTT2483909GCAGGAAAGAGGGACATCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTAC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2495276-2495295
TTCAGTATTTTGACCTATTTGTGCTCTCTT2495276GCAGGAAAGAGGGACATCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTGC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2442012-2442031
TTCAGTATTTTGACCTATTTGTGCTCTCTT2442012GCAGGAAAGAGGGACATCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTAC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2541649-2541668
TTCAGTATTTTGACCTATTTGTGCTCTCTT2541649GCAGGAAAGAGGGACATCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTAC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2638920-2638939
TTCAGTATTTTGACCTATTTGTGCTCTCTT2638920GCAGGAAAGAGGGACATCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTAC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2508447-2508466
TTCAGTATTTTGACCTATTTGTGCTCTCTT2508447GCAGGAAAGAGGGACATCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTAC
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2596734-2596753
TTCAGTATTTTGACCTATTTGTGCTCTCTT2596734GCAGGAAAGAGGGACATCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTAC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2590061-2590080
TTCAGTATTTTGACCTATTTGTGCTCTCTT2590061GCAGGAAAGAGGGACATCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTAC
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2660315-2660334
ATGAATTGATTCAGTATTTTGTGCTCTCTT2660315GCAGGAAAGAGGGACATCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTAC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2700267-2700286
ATGAATTGATTCAGTATTTTGTGCTCTCTT2700267GCAGGAAAGAGGGACATCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTAC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2660753-2660772
TTCCGTATTTTGACCGATTTGTTCTCTCTT2660753GCAGGAAAGAGGGACATCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTAC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2730539-2730558
TTCAGTATTTTGACCTATTTGTGCTCTCTT2730539GCAGGAAAGAGGGACATCAAAGTGAAGGCCCTGGAGGCAGCTGAAGCTAC
Phorcus lineatus genome assembly, chromosome: 16.
OV121096.1:6109640-6109659
TACCTTTTACCTCCACCAAATTTGGGTTTG6109640GCAGGAAAGAGGGACATCAATAATTAAATAAACAAGTATTTATCACAAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGATGTCCCTCTTTCCTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGATGTCCCTCTTTCCTGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.094 | 0.086 | search_plus_done; http://172.18.8.135:50400/match?q=TTGATGTCCCTCTTTCCTGC&k=0&no_gap=0&offset=0&limit=50
0.131 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=GCAGGAAAGAGGGACATCAA&k=0&no_gap=0&offset=0&limit=45
0.139 | 0.008 | cgi_end;

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