GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 14:11:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia mRNA, clone: NFR1_17_40, 3' end sequence, expressed in fruit.
HX739345.1:389-411
TCACCGGCGGGGCCGCCCGTTGCTTCTTCG389TTGGGGGAGTTCTCACTATCATCTTCAAACAATCCTTAAACCTAAAC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:442739-442761
TCTCCGGCGGGGCCGCCCGTTGCTTCTTCG442739TTGGGGGAGTTCTCACTATCATCTTCAAACGATCCTTGAACCTAAACCTCTCT
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:526787-526809
TCTCCGGCGGGGCCGCCCGTTGCTTCTTCG526787TTGGGGGAGTTCTCACTATCATCTTCAAACGATCCTTGAACCTAAACCTCTCT
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:530656-530678
TCTCCGGCGGGGCCGCCCGTTGCTTCTTCG530656TTGGGGGAGTTCTCACTATCATCTTCAAACGATCCTTGAACCTAAACCTCTCT
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:533547-533569
TCTCCGGCGGGGCCGCCCGTTGCTTCTTCG533547TTGGGGGAGTTCTCACTATCATCTTCAAACGATCCTTGAACCTAAACCTCTCT
Crataegus laevigata genome assembly, chromosome: 1.
OY756938.1:420547-420569
TCACCGGCGGCGACGCCCGTTGCTTCTTCG420547TTGGGGGAGTTCTCACTATCATCTTCAAACGATCATTAAACCTAAACCTCTCT
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH035_07940m, 5' end sequence.
AB450715.1:90-112
AGAGAGGTTTAGGTTTAAGGATTGTTTGAA90GATGATAGTGAGAACTCCCCCAACGAAGAAGCAACGGGCGGCCCCGCCGGTGA
Pyrus pyrifolia mRNA, clone: NFR1_17_40, 5' end sequence, expressed in fruit.
HX747030.1:25-47
GTTTAGGTTTAAGGATTGTTTGAA25GATGATAGTGAGAACTCCCCCAACGAAGAAGCAACGGGCGGCCCCGCCGGTGA
TSA: Pyrus pyrifolia mRNA, contig: contig_4730.
FX396821.1:25-47
GTTTAGGTTTAAGGATTGTTTGAA25GATGATAGTGAGAACTCCCCCAACGAAGAAGCAACGGGCGGCCCCGCCGGTGA
Malus domestica genome assembly, chromosome: 15.
OU744556.1:55097120-55097142
AGAGAGGTTTAGGTTCAAGGATCGTTTGAA55097120GATGATAGTGAGAACTCCCCCAACGAAGAAGCAACGGGCGGCACCGCCGGAGA
Crataegus laevigata genome assembly, chromosome: 1.
OY756938.1:42094995-42095017
GATTAGGATTAGGTTTAAGGATCGTTTGAA42094995GATGATAGTGAGAACTCCCCCAACGAAGCAACGGGCGGCGCCGCCGGTGACCG
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:43095257-43095279
AGAGAGGTTTAGGTTTAAGGATTGTTTGAA43095257GATGATAGTGAGAACTCCCCCAACGAAGAAGCAACGGGCGGCGCCGTCGGTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGGGGGAGTTCTCACTATCATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGGGGGAGTTCTCACTATCATC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.209 | 0.201 | search_plus_done; http://172.18.8.135:50400/match?q=TTGGGGGAGTTCTCACTATCATC&k=0&no_gap=0&offset=0&limit=50
0.350 | 0.141 | search_minus_done; http://172.18.8.135:50400/match?q=GATGATAGTGAGAACTCCCCCAA&k=0&no_gap=0&offset=0&limit=44
0.354 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).