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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:45:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

ESTRTADTMSD1_275 ESTRTADTMSD1 Camellia sinensis var. assamica cDNA clone 234 5', mRNA sequence.
GH623847.1:157-176
TGATCTTAAGATTGTGTGAATTTTGTGTTA157TTGGTATAGTTGTGAAATCAAAGATGTGTTTTTTGTTTTTCTACTAAAAA
Sambucus nigra genome assembly, chromosome: 5.
OX422211.1:702809066-702809085
GTGTTTGTTGATGCTTTTTTTTTTCTTCTT702809066TTGGTATAGTTGTGAAATCAAGCCTAATCGACCCATGTTTAAGCACATTC
Aphrophora alni genome assembly, chromosome: 2.
OY740767.1:143895362-143895381
GTACTCTGGATCGTACAAGAAAATGTGATA143895362TTGGTATAGTTGTGAAATCAGACAGTGTTGTTTAAAATAAAGGATTGTTG
Plagodis pulveraria genome assembly, chromosome: 17.
OY982966.1:10220392-10220411
TAAGAAAGGGAAATGTCAGCTGAAACTAAG10220392TTGGTATAGTTGTGAAATCAATTCGTGAAACCATTCTGCAACTACCTATG
Limosilactobacillus frumenti strain LF145 chromosome, complete genome.
CP044534.1:479108-479127
TATGCCCCTCATTTAAAAGCGCAAAATAAG479108TGATTTCACAACTATACCAATATTTTATATAGCGCTTTCTGTTCTTGAAT
Amphipyra tragopoginis genome assembly, chromosome: 22.
HG992013.1:18405823-18405842
TCTGTAAACTCGATACACCTTACAACGTAA18405823TGATTTCACAACTATACCAATATAAAGATAGTGGAATCGCTTAATAAGGA
Epistrophe grossulariae genome assembly, chromosome: 2.
OV839567.1:67484470-67484489
AAAATCTAGATTACATGTAGTATGAACTAT67484470TGATTTCACAACTATACCAATAGTTTACTTGTAAATCAAAATAATAAATT
Maratus speciosus genome assembly, chromosome: 8.
OZ010794.1:318970575-318970594
AATGGAATATAAATATTAGCTATTATTCAA318970575TGATTTCACAACTATACCAATCTACATAATAGATAAAATGTAAATTCTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGGTATAGTTGTGAAATCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGGTATAGTTGTGAAATCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.205 | 0.196 | search_plus_done; http://172.18.8.135:50400/match?q=TTGGTATAGTTGTGAAATCA&k=0&no_gap=0&offset=0&limit=50
0.234 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=TGATTTCACAACTATACCAA&k=0&no_gap=0&offset=0&limit=46
0.237 | 0.003 | cgi_end;

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