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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 03:33:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sciurus carolinensis genome assembly, chromosome: 6.
LR738595.1:42129253-42129270
TTGTCAGTTCTTCGTCCTTGACACAGGGGT42129253TTGTACTTGGCAGGGTCATCTGAATGCATATTGGGTTTGTTTGTACTC
Felis catus Senzu DNA, chromosome: B4, American Shorthair breed.
AP023158.1:25387614-25387631
TACTTGTGAAAAAAGGCATAGAATGTTAGG25387614TTGTACTTGGCAGGGTCAACAATGCATCAAGAGAAACTTAGCATTCAA
MAG: Gammaproteobacteria bacterium isolate bin89 chromosome.
CP070646.1:1274018-1274035
CAGTCCGGCGAGTCGGACGGCTGCACCATC1274018TTGTACTTGGCAGGGTCATACTTGGGTTCGCTCAGCATGTAGACGTCG
PhSFL 101 Podophyllum hexandrum Royle suppression subtractive hybridization (SSH) library Sinopodophyllum hexandrum cDNA similar to putative copper ion-binding laccase, mRNA sequence.
FK934412.1:238-255
ACGGTGTTTCTCTCTTGTGGGTTAACATAG238TTGTACTTGGCAGGGTCATTAACCGGGTCGAAGTTGCCAAACCCTTGA
PhSFL 137 Podophyllum hexandrum Royle suppression subtractive hybridization (SSH) library Sinopodophyllum hexandrum cDNA similar to laccase, mRNA sequence.
FK934432.1:238-255
ACGGTGTTTCTCTCTTGTGGGTTAACATAG238TTGTACTTGGCAGGGTCATTAACCGGGTCGAAGTTGCCAAACCCTTGA
TSA: Arachis hypogaea CL1Contig5060.Arhy mRNA sequence.
EZ726044.1:112-129
AGCAGAACTCCAAAACCAGAGGAGATACTC112TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACGAGGTCAAGA
TSA: Lepeophtheirus salmonis lsal-pac-6250584 mRNA sequence.
JP320630.1:14-31
AGCAGCACCACCC14TTGTACTTGGCAGGGTCAGACCTGACCTTGTCGACGCTGGATTGCAGG
TSA: Pisum sativum contig00125.PisaPYK9 mRNA sequence.
JR950874.1:1176-1193
AGCAAAACTCCAAATCCTGATGAGATACTC1176TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGA
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq1.
LA587963.1:4122-4139
AGAAGAATTCCAAAACCGGATGAAATACTT4122TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq3.
LA587965.1:3799-3816
AGAAGAATTCCAAAACCGGATGAAATACTT3799TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq5.
LA587967.1:3835-3852
AGAAGAATTCCAAAACCGGATGAAATACTT3835TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq12.
LA587973.1:4416-4433
AGAAGAATTCCAAAACCGGATGAAATACTT4416TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq15.
LA587976.1:4050-4067
AGAAGAATTCCAAAACCGGATGAAATACTT4050TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq18.
LA587977.1:4124-4141
AGAAGAATTCCAAAACCGGATGAAATACTT4124TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq22.
LA587981.1:3878-3895
AGAAGAATTCCAAAACCGGATGAAATACTT3878TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq28.
LA587987.1:4373-4390
AGAAGAATTCCAAAACCGGATGAAATACTT4373TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq29.
LA587988.1:4371-4388
AGAAGAATTCCAAAACCGGATGAAATACTT4371TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq31.
LA587990.1:4048-4065
AGAAGAATTCCAAAACCGGATGAAATACTT4048TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq32.
LA587991.1:4095-4112
AGAAGAATTCCAAAACCGGATGAAATACTT4095TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq33.
LA587992.1:3801-3818
AGAAGAATTCCAAAACCGGATGAAATACTT3801TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq34.
LA587993.1:4418-4435
AGAAGAATTCCAAAACCGGATGAAATACTT4418TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq35.
LA587994.1:3833-3850
AGAAGAATTCCAAAACCGGATGAAATACTT3833TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq42.
LA588001.1:4201-4218
AGAAGAATTCCAAAACCGGATGAAATACTT4201TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq44.
LA588003.1:4203-4220
AGAAGAATTCCAAAACCGGATGAAATACTT4203TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq48.
LA588007.1:4158-4175
AGAAGAATTCCAAAACCGGATGAAATACTT4158TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq49.
LA588008.1:4093-4110
AGAAGAATTCCAAAACCGGATGAAATACTT4093TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq59.
LA588018.1:3846-3863
AGAAGAATTCCAAAACCGGATGAAATACTT3846TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq60.
LA588019.1:4156-4173
AGAAGAATTCCAAAACCGGATGAAATACTT4156TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq61.
LA588020.1:4169-4186
AGAAGAATTCCAAAACCGGATGAAATACTT4169TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
TSA: Humulus lupulus var. lupulus mRNA, contig: comp293411_c0_seq62.
LA588021.1:3880-3897
AGAAGAATTCCAAAACCGGATGAAATACTT3880TTGTACTTGGCAGGGTCAATCTGCATATTACACTTGACAAGGTCAAGC
88-L105526-1033-023-P21-ccfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-023-P21 5', genomic survey sequence.
JY316244.1:491-508
CATGTAGAGATGTACTAATACACTTCCTAA491TTGTACTTGGCAGGGTCAATTCCACCATGTGAGGGGGAAAGGCATTGG
BES_z59O22_R IGS-SCF-0106 Bvu-KWS2320 BAC library Beta vulgaris subsp. vulgaris genomic clone z59O22, genomic survey sequence.
KG032366.1:63-80
CATGTAGAGATGTACTAATACACTTCCTAA63TTGTACTTGGCAGGGTCAATTCCACCATGTGAGGGGGAAAGGCATTGG
Monodelphis domestica clone VMRC18-269H24, WORKING DRAFT SEQUENCE, 7 ordered pieces.
AC231726.2:84052-84069
AGGCTGAACCAAAAACAGGTCATAGGAAAA84052TTGTACTTGGCAGGGTCACTTGGTAGTTCACTATTGGAATCAATAAAC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 11.
CP124721.1:159133158-159133175
CAGAGAATGTGACCTTTCAAAGATAGCTTT159133158TTGTACTTGGCAGGGTCACTTTGAATTCCTAGTTATGTCCTTTGGTCG
Microcos paniculata chromosome 7b.
CP131453.1:36685080-36685097
AGCAGCACTCCGAAACCAGATGAGATACTT36685080TTGTACTTGGCAGGGTCAATCTGGCAATAAAACAATCAAGATATCAAT
Microcos paniculata chromosome 7a.
CP131462.1:37183892-37183909
AGCAGCACTCCGAAACCAGATGAGATACTT37183892TTGTACTTGGCAGGGTCAATCTGGCAATAAAACAATCAAGATATCAAT
Antiaris toxicaria isolate JCLG002 chromosome 13.
CP141165.1:23199478-23199495
AACAAAAGCTAGGCTCGCTTGACGGTCTTC23199478TTGTACTTGGCAGGGTCAATCAGTGCGGCCATTATCTCCTATTATAAT
Antiaris toxicaria isolate JCLG002 chromosome 13.
CP141178.1:21655172-21655189
AACAAAAGCTAGGCTCGCTTGACGGTCTTC21655172TTGTACTTGGCAGGGTCAATCAGTGCGGCCATTATCTCCTATTATAAT
Medicago arabica genome assembly, chromosome: 6.
OX326969.1:43488106-43488123
AGCAAAACTCCAAACCCTGATGAGATGCTC43488106TTGTACTTGGCAGGGTCAATCTGAAATCAACAATCAAATAACACATCA
Ballota nigra genome assembly, chromosome: 1.
OX344720.1:20752317-20752334
TCAAAACCTAATTCAGGAGAAAAGCTGTAT20752317TTGTACTTGGCAGGGTCAGAAGTGGCGATCAGCTCAGTCCTAGTTCGA
Ballota nigra genome assembly, chromosome: 3.
OX344722.1:89806554-89806571
TCAAAACTCGTCCCAGGAGAAAAGCTATAC89806554TTGTACTTGGCAGGGTCAGAAGTGACAATCAGCTCTGTTCTGGTACGA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392550.1:32285952-32285969
CATGTAGAGATGTACTTATACACTTCCTAA32285952TTGTACTTGGCAGGGTCAATTCCACCATGTGAGGGAGAAAGGCATTGG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392552.1:24737460-24737477
CATGTAGAGATGTACTTATACACTTCCTAA24737460TTGTACTTGGCAGGGTCAATTCCACCATGTGAGGGGGAAAGGCATTGG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392556.1:42400527-42400544
CATGTAGAGATGTACTAATACACTTCCTAA42400527TTGTACTTGGCAGGGTCAATTCCACCATGTGAGGGGGAAAGGCATTGG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 6.
OX392561.1:24779639-24779656
CATGTAGAGATGTACTTATACACTTCCTAA24779639TTGTACTTGGCAGGGTCAATTCCACCATGTGAGGGGGAAAGGCATTGG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 8.
OX392563.1:16315875-16315892
CATGTAGAGATGTACTTATACACTTCCTAA16315875TTGTACTTGGCAGGGTCAATTCCACCATGTGAGGGGGAAAGGCATTGG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392564.1:40062479-40062496
CATGTACAGATGTACTAATACACTTCCTAA40062479TTGTACTTGGCAGGGTCAATTCCACCATGTGAGGGGGAAAGGCATTGG
Populus nigra genome assembly, chromosome: 1.
OX637672.1:17316831-17316848
AGTAGAACTCCAAAACCAGATGAGATGCTC17316831TTGTACTTGGCAGGGTCAATCTAAAAAATCAATCATATAAACATTAAT
Trifolium dubium genome assembly, chromosome: 4.
OX638065.1:40847087-40847104
AGTAAAGTTCCAAAACCTGATGAGATGCTC40847087TTGTACTTGGCAGGGTCAATCTGAAATCAATAATCATTACACACATTA
Trifolium dubium genome assembly, chromosome: 11.
OX638072.1:28545335-28545352
AGTAAAGTTCCAAAACCTGATGAGATGCTC28545335TTGTACTTGGCAGGGTCAATCTGAAATCAATCATCATTCCACACGTTA
Erodium maritimum genome assembly, chromosome: 6.
OY997593.1:20834339-20834356
AGTAAAATACCAAAACCAGAGGAGATGCTC20834339TTGTACTTGGCAGGGTCAATCTAAAAAATGAAATATTTTAACATCAAT
Lathyrus sativus genome assembly, chromosome: 3.
OZ012737.1:541113029-541113046
AGCAAAACTCCAAACCCTGATGAGATGCTC541113029TTGTACTTGGCAGGGTCAATCTGAAATCAATAAGCAATCCACACATTA
Elizabethkingia miricola strain EM798-26 chromosome, complete genome.
CP023746.1:3594432-3594449
AGTTTATGAACACCGTCAATCTCTTCTTTT3594432TTGTACTTGGCAGGGTCATAATAGCCTTTATTATCACAATTAAAAGTT
Elizabethkingia bruuniana strain ATCC 33958 chromosome, complete genome.
CP035811.1:4278521-4278538
GAGTTTATGAACACCGTCAATCTCTTCTTT4278521TTGTACTTGGCAGGGTCATAATAGCCTTTATTATCACAATTAAAAGTT
Elizabethkingia bruuniana strain FDAARGOS_1031 chromosome, complete genome.
CP067018.1:1108669-1108686
AGTTTATGAACACCGTCAATCTCTTCTTTT1108669TTGTACTTGGCAGGGTCATAATAGCCTTTATTATCACAATTAAAAGTT
Meta bourneti genome assembly, chromosome: 7.
OW119928.1:43800638-43800655
CTTGCATGTGCATGTCCACTTGACGCTGTC43800638TTGTACTTGGCAGGGTCACGGTAGCCCGGTTGGTAGAGTAAAGGATTA
Sepiola atlantica genome assembly, chromosome: 10.
OY744524.1:46293204-46293221
GGCTGATCTATGATCAGATGCAGTTCGGCT46293204TTGTACTTGGCAGGGTCACAATTAATGCCATATTCATTGTTCGACAAC
Hololepta plana genome assembly, chromosome: 3.
OY968833.1:8933030-8933047
ATCATCATCTTCTAAATATACTGCATGGTT8933030TTGTACTTGGCAGGGTCAACTTCTTAATGGTTGTACTTGTACGAAGTT
Plagodis dolabraria genome assembly, chromosome: 3.
OY978443.1:5310802-5310819
AACCAAAACGTCTACCATTGTACAAAGGCA5310802TTGTACTTGGCAGGGTCATGGGGATCGCAGTTAATGGTGAAAATCAGA
Euplagia quadripunctaria genome assembly, chromosome: 17.
OY982576.1:20920180-20920197
AAAAAGGATGGTGCGACTGTACCTTTTGGC20920180TTGTACTTGGCAGGGTCACTGCCGTGTCCCTGAAGGAAAATTTATTAA

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