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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 20:35:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a005L11_SP6.
AM057817.1:295-320
AAGACACTCGCGGAGATTACGAGAAGATGC295TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a008N17_SP6.
AM058659.1:298-323
AAGACACTCGCGGAGATTACGAGAAGATGC298TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a014F16_SP6.
AM060178.1:274-299
AAGACACTCGCGGAGATTACGAGAAGATGC274TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a022K21_SP6.
AM062547.1:156-181
AAGACACTCGCGGAGATTACGAGAAGATGC156TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
OL8654R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8654, mRNA sequence.
EH428501.1:261-286
AAGACACTCGCGGAGATTACGAGAAGATGC261TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
OL8685R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8685, mRNA sequence.
EH428545.1:261-286
AAGACACTCGCGGAGATTACGAGAAGATGC261TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
OL8679R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8679, mRNA sequence.
EH428547.1:261-286
AAGACACTCGCGGAGATTACGAGAAGATGC261TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
OL8687R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8687, mRNA sequence.
EH428561.1:261-286
AAGACACTCGCGGAGATTACGAGAAGATGC261TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
46RDOAG_UP_057_D02_01FEB2006_010 Brassica oleracea 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
ES937947.1:435-460
AAGACACTCGCGGAGATTACGAGAAGATGC435TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
46RDOAG_UP_063_D01_01FEB2006_009 Brassica oleracea 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
ES938463.1:120-145
AAGACACTCGCGGAGATTACGAGAAGAGGC120TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
47RDOAH_UP_054_B06_30JAN2006_046 Brassica oleracea 47RDOAH Brassica oleracea cDNA 5', mRNA sequence.
ES940181.1:362-387
AAGACACTCGCGGAGATTACGAGAAGATGC362TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
48RDOAM_UP_068_F01_07FEB2006_005 Brassica oleracea 48RDOAM Brassica oleracea cDNA 5', mRNA sequence.
ES944452.1:492-517
AAGACACTCGCGGAGATTACGAGAAGATGC492TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
BOT01-95F5TF BOT01 Brassica oleracea genomic clone BOT01-95F5, genomic survey sequence.
FI748219.1:674-699
AAGACACTCGCGGAGATTACGAGAAGATGC674TTGTCGCACTTCTCGGTGAAGATGATGCTTAAATCAGATCAATCCTCCACAGAGAA
AL_NL019H11.R AL_NL Arabidopsis lyrata genomic 3', genomic survey sequence.
HN193561.1:545-570
AAGACACCCGTGGAGATTACGAGAAGATGC545TTGTCGCACTTCTCGGTGAAGATGATGCTTAATCAATCAATCCTCCGCAGAAAAAC
AL_NL060O08.F AL_NL Arabidopsis lyrata genomic 5', genomic survey sequence.
HN224414.1:550-575
AAGACACCCGTGGAGATTACGAGAAGATGC550TTGTCGCACTTCTCGGTGAAGATGATGCTTAATCAATCAATCCTCCGCAGAAAAAC
AL_NL033K23.F AL_NL Arabidopsis lyrata genomic 5', genomic survey sequence.
HN225805.1:565-590
AAGACACCCGTGGAGATTACGAGAAGATGC565TTGTCGCACTTCTCGGTGAAGATGATGCTTAATCAATCAATCCTCCGCAGAAAAAC
Arabidopsis arenosa genome assembly, chromosome: 1.
LR999451.1:15884791-15884816
AAGACACTCGTGGAGATTACGAGAAGATGC15884791TTGTCGCACTTCTCGGTGAAGATGATGCTTAATCAATCAATCCTCCACAGAGAAAC
Nasturtium officinale genome assembly, chromosome: 2.
OY978500.1:10787894-10787919
AAGACACTCGTGGAGATTACGAGAAGATGC10787894TTGTCGCACTTCTCGGTGAAGATGATGCTTAATCTATCAAAACCTTCACAGAGAAA
Cardamine chenopodiifolia genome assembly, chromosome: 25.
OZ000483.1:13027714-13027739
AAGACACTCGTGGAGATTACGAGAAGATGC13027714TTGTCGCACTTCTCGGTGAAGATGATGCTTAATCAATCAATCCTCCTCAGGAGAAA
OL6998F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL6998, mRNA sequence.
EH425371.1:105-130
TTCTCTGTGGAGGATTGATCTGATTTAAGC105ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCGCGAGTGTCTT
OL8654F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8654, mRNA sequence.
EH428499.1:207-232
TTCTCTGTGGAGGATTGATCTGATTTAAGC207ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCGCGAGTGTCTT
OL8679F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8679, mRNA sequence.
EH428525.1:181-206
TTCTCTGTGGAGGATTGATCTGATTTAAGC181ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCGCGAGTGTCTT
OL8687F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8687, mRNA sequence.
EH428554.1:177-202
TTCTCTGTGGAGGATTGATCTGATTTAAGC177ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCGCGAGTGTCTT
OL8685F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL8685, mRNA sequence.
EH428556.1:205-230
TTCTCTGTGGAGGATTGATCTGATTTAAGC205ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCGCGAGTGTCTT
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:31823131-31823156
TTCTCTGTGGAGGATTGATCTGATTTAAGC31823131ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCGCGAGTGTCTT
Cardamine chenopodiifolia genome assembly, chromosome: 9.
OZ000467.1:16085542-16085567
TTTATCTGAGGAGGATTTGATAGATTAAGC16085542ATCATCTTCACCGAGAAGTGCGACAAGCATCTTCTCGTAATCTCCACGAGTGTCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGTCGCACTTCTCGGTGAAGATGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTCGCACTTCTCGGTGAAGATGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.706 | 0.697 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTCGCACTTCTCGGTGAAGATGAT&k=0&no_gap=0&offset=0&limit=50
0.973 | 0.268 | search_minus_done; http://172.18.8.135:50400/match?q=ATCATCTTCACCGAGAAGTGCGACAA&k=0&no_gap=0&offset=0&limit=31
0.978 | 0.005 | cgi_end;

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