GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 00:07:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Allium cepa genome assembly, chromosome: 7.
LR994635.1:46023193-46023212
GTGATTACCAGCCACGTTTCTAGTCTTTAG46023193TTGTGCCCAGATATTGGTGTCTGCTTTATTTGTTCTGTTTTTCTGATTCA
Spirometra erinaceieuropaei genome assembly, scaffold: SPER_scaffold0016733.
LN016974.1:6067-6086
TCATAATGTTGTTATTTATTAACGTAGATA6067TTGTGCCCAGATATTGGTGTCGGTTTGCAGGTGGTCAACGATCATTTGCG
Rhinatrema bivittatum genome assembly, chromosome: 6.
LR584392.1:120762175-120762194
CACAGATTAGAGTTATGACAGTGTCACAAT120762175ACACCAATATCTGGGCACAAGAGGACTCTAATGCTGTGTTCGTCTTGGGA
TSA: Allium cepa CUDHLF2_20752 mRNA sequence.
JR863570.1:174-193
TGAATCAGAAAAACAGAACAAATAAAGCAG174ACACCAATATCTGGGCACAACTAAAGACTAGAAACGTGGCTGGTAATCAC
Eilema griseolum genome assembly, chromosome: 9.
OY759238.1:5027029-5027048
ATGTGAATGCCATCAACAGTGACCTTGAAA5027029ACACCAATATCTGGGCACAATCTTTTGGACTGCAGGTCAACCAAAAAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGTGCCCAGATATTGGTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTGCCCAGATATTGGTGT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTGCCCAGATATTGGTGT&k=0&no_gap=0&offset=0&limit=50
0.152 | 0.041 | search_minus_done; http://172.18.8.135:50400/match?q=ACACCAATATCTGGGCACAA&k=0&no_gap=0&offset=0&limit=48
0.154 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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