GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

M54C3STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone M54C3 5', mRNA sequence.
BE524785.1:134-153

AAACAGAACTTGTTTGTGAGAAAACTCAGC134TTGTGCTGTGTTGTGTTCGATTTCTCGGATCCAACGAAAAACGTTAAGGA

TSA: Musa acuminata AAA Group Unigene78395_B1 mRNA sequence.
JV328178.1:356-375

AAGCAGAGCTTGTTCATGCGAAAGTTGGAT356TTGTGCTGTGTTGTGTTCGACTTCACTGACCCGGCAAAGAACTTGAAGGA

TSA: Musa acuminata AAA Group Unigene82724_NK1 mRNA sequence.
JV442876.1:356-375

AAGCAGAGCTTGTTCATGCGAAAGTTGGAT356TTGTGCTGTGTTGTGTTCGACTTCAC

Eustoma grandiflorum DNA, chromosome 1, draft genome sequence.
AP025040.1:218060-218079

AAGCAGAATTTATTCATTAAGAAGGTCAGT218060TTGTGCTGTGTTGTGTTCGACTTCACTGACCCGACAAAAGATTTGAAAGA

Cenchrus americanus genome assembly, chromosome: PMC23DB6.
OX387244.1:71698344-71698363

AAGCCCAACCTGTTTGTCAGCAAGGTGAGC71698344TTGTGCTGTGTTGTGTTCGATTTCTCCGACCCGGACAAGAATTCAGCGGA

Berberis vulgaris genome assembly, chromosome: 5.
OY747128.1:28197390-28197409

CGACGTCAGGAGAGGCGACTTCTGCCATGG28197390TTGTGCTGTGTTGTGTTCGATCAGAGATTCTGCAATGGCGTTTGCGTTGT

Berberis vulgaris genome assembly, chromosome: 9.
OY747132.1:5738235-5738254

CGACGTCAGTAGAGGCGACTTCTGCCATGG5738235TTGTGCTGTGTTGTGTTCGATCAGAGATTCTGCAATGGCGTTTGCGTTGT

Cenchrus americanus genome assembly, chromosome: Pg6.
OZ001402.1:76116917-76116936

AAGCCCAACCTGTTTGTCAGCAAGGTGAGC76116917TTGTGCTGTGTTGTGTTCGATTTCTCCGACCCGGACAAGAATTCAGCGGA

Cenchrus americanus genome assembly, chromosome: Pg6.
OZ001410.1:76694108-76694127

AAGCCCAACCTGTTTGTCAGCAAGGTGAGC76694108TTGTGCTGTGTTGTGTTCGATTTCTCCGACCCGGACAAGAATTCAGCGGA

Coremacera marginata genome assembly, chromosome: 3.
OU612045.1:37067505-37067524

TTATTAAGTAAAAGTTTTTAAATTCACTAG37067505TTGTGCTGTGTTGTGTTCGAGTTGTGCTGCAATGAGCTATAGAGAAATTT

Coremacera marginata genome assembly, chromosome: 4.
OU612046.1:166037068-166037087

CGCCATTAAATTTTTTTATAAATTCGGAAA166037068TTGTGCTGTGTTGTGTTCGAGATGTGCTGCAATGTGCCGTAGCGAGTATT

Stratiomys singularior genome assembly, chromosome: 5.
OX940881.1:26475046-26475065

AGCAACAAAGCAAAAAATCTGCCATAATCA26475046TTGTGCTGTGTTGTGTTCGATGTGAGGAAGCTCGTAGCGAACCGCAACTT

Plemyria rubiginata genome assembly, chromosome: 8.
OY754913.1:12125755-12125774

TACAGTGATACCAATCCGTCGATAAGTGCC12125755TTGTGCTGTGTTGTGTTCGATGACCGAATGTTGGTAAGTTTTATTCGTGA

Clepsis dumicolana genome assembly, chromosome: 25.
OY829530.1:7672119-7672138

CAAGTGACGTGTGTTATTTTTTAGACAATA7672119TTGTGCTGTGTTGTGTTCGAATTGTGTACATAATGTTCAGGTATGCTTTG

Pogonocherus hispidulus genome assembly, chromosome: 3.
OZ004694.1:24677106-24677125

CAACCTTTTCGATTTTTGAAAAAATGATTC24677106TTGTGCTGTGTTGTGTTCGACTTGTGCTGTTTTGTACCGTTGTCTGACTT

Tipula lateralis genome assembly, chromosome: 2.
OZ010737.1:121844538-121844557

TTATGCTTCTGGAGAAAACAATTTCGTCTG121844538TTGTGCTGTGTTGTGTTCGATGACTGTGAGAAACAAACAAAAGTGTATTA

Musa troglodytarum cultivar karat chromosome 8.
CP097510.1:62556448-62556467

TCTTTCAAATTCTTTGCTGGGTCAGTGAAG62556448TCGAACACAACACAGCACAAATCCAACTTTCGCAAGAACAAGCTCTGCTT

Musa acuminata subsp. malaccensis isolate AA chromosome 8.
CP126377.1:1099056-1099075

TCCTTCAAGTTCTTTGCCGGGTCAGTGAAG1099056TCGAACACAACACAGCACAAATCCAACTTTCGCATGAACAAGCTCTGCTT

Musa acuminata subsp. malaccensis isolate AA chromosome 19.
CP126388.1:1108021-1108040

TCTTTCAAGTTCTTTGCCGGGTCAGTGAAG1108021TCGAACACAACACAGCACAAATCCAACTTTCGCATGAACAAGCTCTGCTT

Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A08.
HG996472.1:1058234-1058253

TCCTTCAAGTTCTTTGCCGGGTCAGTGAAG1058234TCGAACACAACACAGCACAAATCCAACTTTCGCATGAACAAGCTCTGCTT

Musa schizocarpa genome assembly, chromosome: S08.
LS990922.1:1146284-1146303

TCTTTCAAGTTCTTTGCCGGGTCAGTGAAG1146284TCGAACACAACACAGCACAAATCCAACTTTCGCATGAACAAGCTCTGCTT

Sambucus nigra genome assembly, chromosome: 10.
OX422216.1:157113712-157113731

AAATTCGACAATACAAGGATTTATTAAATC157113712TCGAACACAACACAGCACAAAATCGTGTTTTTTACTACCATAAACACGAG

Berberis vulgaris genome assembly, chromosome: 6.
OY747129.1:91058651-91058670

ACAATGCAAACGCCATTGCAGAATCTCTGA91058651TCGAACACAACACAGCACAACCATGGCAGAAGTCACCTCTCCTGACATCG

Berberis vulgaris genome assembly, chromosome: 9.
OY747132.1:27142568-27142587

ACAACGCAAACGCCATTGCATAATCTCTTA27142568TCGAACACAACACAGCACAACCATGGCAGAAGTCGCCTTTCCTGACGTCG

Vaccinium vitis-idaea genome assembly, chromosome: 8.
OY978222.1:39536649-39536668

TCTTTCAAATTCTTTGTTGGATCAGTGAAG39536649TCGAACACAACACAGCACAAGTTCAGCTTTTTGACAAACAAGTTCTGCTT

Sarcophaga variegata genome assembly, chromosome: 4.
OW026361.1:80748856-80748875

CCCAAAGTGCTTCTCATGAATATTCCAATG80748856TCGAACACAACACAGCACAACAGTTTAATTACCCATGTAGCAGGAACAAG

Sarcophaga subvicina genome assembly, chromosome: 3.
OW388082.2:74043756-74043775

CCCAAAGTGCTTCTCATGAATATTCCAATG74043756TCGAACACAACACAGCACAACAGTTTAATTACCCATGTAGCAGGAATCAG

Leucoma salicis genome assembly, chromosome: 17.
OX411820.1:5125970-5125989

TAATCACAGACGTTAAGTTTGAATGTGTTA5125970TCGAACACAACACAGCACAATCAGGAGCAATTGTCACGATTACTGAATTG

Aphrophora alni genome assembly, chromosome: X.
OY740765.1:126110903-126110922

TGTCTGTACTTTTTGTCGTCTGTGTAGCGG126110903TCGAACACAACACAGCACAAACACGTGGACAGATTTTAGTGAAATGGGTG

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Debug Info:

0.009 | 0.009 | search_start;
0.176 | 0.167 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTGCTGTGTTGTGTTCGA&k=0&no_gap=0&offset=0&limit=50
0.219 | 0.042 | search_minus_done; http://172.18.8.135:50400/match?q=TCGAACACAACACAGCACAA&k=0&no_gap=0&offset=0&limit=34
0.227 | 0.009 | cgi_end;

Summary:

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