GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 21:43:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sciurus carolinensis genome assembly, chromosome: 15.
LR738605.1:71299764-71299781
TGAAAAATAACCTTGGTTGGGTTATAGAGA71299764TTGTGTTGTGTTGAGTCCTACAAAAATAGGAACAAAATTCTAAGATAA
Sciurus vulgaris genome assembly, chromosome: 13.
LR738624.1:88752112-88752129
TGAAAAATAACCTTGGTTGGATTATAGAGA88752112TTGTGTTGTGTTGAGTCCTACAAAAATAGGAAGAAAATTCTAAGATAA
Micromys minutus genome assembly, chromosome: 22.
OZ004802.1:36611745-36611762
AGCAAACACGAATGTGTAGATATCTCTGTG36611745TTGTGTTGTGTTGAGTCCTTTGGGAATACTCTCAAGTAGTATCTAAGG
Martes martes genome assembly, chromosome: 4.
OY734066.1:178450113-178450130
TTAGACACAGAACAATGGAGAGAAAGAAAC178450113TTGTGTTGTGTTGAGTCCCCGGGAGTGCAGGGGTATTTACAACCACAG
Plectropomus leopardus DNA, chromosome 14, nearly complete sequence.
AP022713.1:12452598-12452615
GATTTTTGCTATCAGATGATATGCACCATG12452598TTGTGTTGTGTTGAGTCCCACTGAATGTTACAGGAAGCCAATCAATAT
Zebrafish DNA sequence from clone DKEY-286O23 in linkage group 18.
BX927071.12:25083-25100
TTAAGACTCTTTCTTTCTGTTTTTGTTTAG25083TTGTGTTGTGTTGAGTCCAATTGAATTGAGTTGTTTTGTTTTGCTTTG
Oryzias latipes strain HNI chromosome 13.
CP020791.1:26211121-26211138
ATTTTTTCTGTAAAGAGTCATGCTTGTAAG26211121TTGTGTTGTGTTGAGTCCTATTGGCTGAACCAAATTCAGTATGAAGCT
Erpetoichthys calabaricus genome assembly, chromosome: 10.
LR536441.2:65399791-65399808
AAAGTCAGACCATCTGCCTGTAGACTCAGA65399791TTGTGTTGTGTTGAGTCCATCTGTACCTATCTGGTTCTTCTCCATCTT
Erpetoichthys calabaricus genome assembly, chromosome: 16.
LR536447.2:20548897-20548914
AGGCTGATGTTTACCTCTGATGGGTATCAT20548897TTGTGTTGTGTTGAGTCCCTAAAACATCATGTCGTGAGGCTGATATGT
Sphaeramia orbicularis genome assembly, chromosome: 3.
LR597460.1:6656440-6656457
CATTTTAACCAGAGTAATGTTTCACTTTTT6656440TTGTGTTGTGTTGAGTCCTGTCTGCAGTTTTACAGGCGTCTATTTGCT
Danio rerio strain Cooch Behar (CB) genome assembly, chromosome: 18.
LR812561.1:11856484-11856501
TTAAAACTCTTTCTTTCTGTTTTTGTTTAG11856484TTGTGTTGTGTTGAGTCCAATTGAATTGAGTTGTTTTGTTTTGCTTTG
Danio rerio genome assembly, chromosome: 18.
LR812611.1:13447060-13447077
TTAAGACTCTTTCTTTCTGTTTTTGTTTAG13447060TTGTGTTGTGTTGAGTCCAATTGAATTGAGTTGTTTTGTTTTGCTTTG
Trachurus trachurus genome assembly, chromosome: 11.
LR991641.1:24942490-24942507
AACCTTATTGTGTCTTGTTGTGCACGTGCA24942490TTGTGTTGTGTTGAGTCCCTGGTGTGTATATACACCAAGTCTGAGACT
Pholis gunnellus genome assembly, chromosome: 1.
OU342804.1:5353922-5353939
AACCCCAATTTGTGTCTTTTGAACTTGTAT5353922TTGTGTTGTGTTGAGTCCTTACATATATCAAAAATAATACCTCAATGT
Vipera ursinii genome assembly, chromosome: 4.
OX365968.1:58192110-58192127
GGTATTTCGTAATCTGTTAGTTGTTTTGTT58192110TTGTGTTGTGTTGAGTCCTAGTGACTGCCTGGACAAGTCTCTGCATCT
Phoxinus phoxinus genome assembly, chromosome: 20.
OX424428.1:9262963-9262980
CCACGGTTCGGCACACACTTGCTTTCCTAA9262963TTGTGTTGTGTTGAGTCCATCGTACAATAAAATTCAGTCACATAAGCA
Zeus faber genome assembly, chromosome: 5.
OY482849.1:33991418-33991435
GTGCCCATGGGTATTGTTTTGTGTTGAGTG33991418TTGTGTTGTGTTGAGTCCTACTGGATTATGCATTCCTGTACCCAGAAG
Psittacula echo genome assembly, chromosome: 8.
OY725428.1:23938335-23938352
ACCACCAGCGGGAAGAAGGCAATGGCTGAC23938335TTGTGTTGTGTTGAGTCCTTCCCGGTGGGGAGGCGTTTCTGACCTTGG
Limanda limanda genome assembly, chromosome: 6.
OY754997.1:9941797-9941814
TTGTGCAGGAGTCTTCAGGTGAAATTAGAC9941797TTGTGTTGTGTTGAGTCCTCTACAATTTCCACCTTCTGAAAACACTCA
GD_TBa076B24.R GD_TBa Glycine dolichocarpa genomic 3', genomic survey sequence.
HN366663.1:476-493
GGATGGTTCTCTGATAGGCTAGAGCCTTGA476TTGTGTTGTGTTGAGTCCAAGTGGCTAGTTGAACGAGACTTTGAGTGG
GD_TBa284P09.R GD_TBa Glycine dolichocarpa genomic 3', genomic survey sequence.
HN373155.1:477-494
GGATGGTTCTCTGATAGGCTAGAGCCTTGA477TTGTGTTGTGTTGAGTCCAAGTGGCTAGTTGAACGAGACTTTGAGTGG
GT_DBa079G18.R GT_DBa Glycine tomentella genomic 3', genomic survey sequence.
HN640812.1:467-484
GGATGGTTCTCTGATAGGCTAGAGCCTTGA467TTGTGTTGTGTTGAGTCCAAGTGGCTAGTTGAACGAGACCTTGAGTGG
GT_DBa032I07.F GT_DBa Glycine tomentella genomic 5', genomic survey sequence.
HN661171.1:591-608
GGATGGTTCTCTGATAGGCTAGAGCCTTGA591TTGTGTTGTGTTGAGTCCAAGTGGCTAGTTGAACGAGACCTTGAGTGG
Citrus reticulata microsatellite DNA, locus mCrCIR01F08, allele 01F08-gaat(6).
AM489737.1:117-134
TTGCAGAGCGTGCGAGAACGTGCGGTTGCG117TTGTGTTGTGTTGAGTCCTTCAAAGCAAAAGTA
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:53915969-53915986
AGATATTTATAGTCGAGGGGATGTGGAGAG53915969TTGTGTTGTGTTGAGTCCGTGTGCTCTGAAGATGTATATCAATCATAT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 11.
CP124709.1:122233020-122233037
TAATTCGCGTGCAACCCACAGAGAGTAAGA122233020TTGTGTTGTGTTGAGTCCGGTTGGAGTACTGGTGAGCTCCCCGTTCGG
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A04.
HG996469.1:36017069-36017086
GTCCACGTATTCAATTATTATGTGTTTTTG36017069TTGTGTTGTGTTGAGTCCATAGGAGATCTGTTTATTTATAGATGGGAG
Avena sativa genome assembly, chromosome: 5A.
OU342382.1:456776961-456776978
CCGTCATTTTTTTTGTTTTGCTTTTTTGGG456776961TTGTGTTGTGTTGAGTCCCCAAACGAACGATCTTTATTTTTGTTTCTC
Avena longiglumis genome assembly, chromosome: 5A.
OU342751.1:558229854-558229871
CCGTCATTTTTTTTGTTTTGCTTTTTTGGG558229854TTGTGTTGTGTTGAGTCCCCAAACGAACGATCTTTATTTTTGTTTCTC
Avena sativa genome assembly, chromosome: 5.
OV702283.1:463185438-463185455
CCGTCATTTTTTTTGTTTTGCTTTTTTGGG463185438TTGTGTTGTGTTGAGTCCCCAAACGAACGATCTTTATTTTTGTTTCTC
Scutellaria galericulata genome assembly, chromosome: 9.
OX335792.1:14302112-14302129
AACAACATTCGAATCCCTTGTCTTCTATTG14302112TTGTGTTGTGTTGAGTCCATGGTTGATTGCTTACTGCACATAATCCCA
Scutellaria minor genome assembly, chromosome: 6.
OX940730.1:18241077-18241094
TAACAAATTCGAATCCCTTGTCTTCTATTG18241077TTGTGTTGTGTTGAGTCCATGGTTGATTGCTTCTGCACATAATCCCAT
Scutellaria minor genome assembly, chromosome: 6.
OX940730.1:18256290-18256307
TGTAACATCTGAATCCCTTGTCATCTATTG18256290TTGTGTTGTGTTGAGTCCGTGGAGGATTGCTTCTGCACATAATCCTAT
Parietaria judaica genome assembly, chromosome: 5.
OX940864.1:27748221-27748238
TAGGCTATAAATATACCTAGCATGTACACT27748221TTGTGTTGTGTTGAGTCCATTAGAATTTTGAGTTTATCTTCTTGTATT
Agrostemma githago genome assembly, chromosome: 1.
OY288239.1:88146350-88146367
CCATCACATGCCGTGTTGTGTTGTGTTGTG88146350TTGTGTTGTGTTGAGTCCTCCCAAATTGGGCTCGTGCCAACATATCGT
Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:10889628-10889645
TTGCAGAGCGTGCGAGAACGTGCGGTTGCG10889628TTGTGTTGTGTTGAGTCCTTCAAAGCAAAAGCAATTCATATTCTCTCT
Sphagnum contortum genome assembly, chromosome: 10.
OY987285.1:5947686-5947703
CTTCAATATGTACAATGGAGGAGTGTTGTG5947686TTGTGTTGTGTTGAGTCCTCCTCCATGTTACTTACTTGAGAGAAAAAA
Nesidiocoris tenuis Japan DNA, chromosome 1, sequence.
AP028909.1:13326784-13326801
TTGAGTTGAGTTGAGTTGAGTTGTGTTGTG13326784TTGTGTTGTGTTGAGTCCCCCGTCGATAAAAAGAAACAATCTGTTGAA
Nesidiocoris tenuis Japan DNA, chromosome 1, sequence.
AP028909.1:13331939-13331956
TTGAGTTGAGTTGAGTTGAGTTGTGTTGTG13331939TTGTGTTGTGTTGAGTCCCCCGTCGATAAAAAGAAACAATCTGTTGAA
Ennomos fuscantarius genome assembly, chromosome: 18.
HG992041.1:5245912-5245929
CTTAATACAAATAATTTACGAATTTTCATT5245912TTGTGTTGTGTTGAGTCCGTACTTCCGCCTGCATAAACTGAGATAAAA
Erynnis tages genome assembly, chromosome: 17.
LR990088.1:271201-271218
CGCTACTATAAAACGACGTTTTTGACGAAT271201TTGTGTTGTGTTGAGTCCTGTAATTTGATAATTTTAAATTGGTATGAT
Notocelia uddmanniana genome assembly, chromosome: 13.
LR991065.1:8823001-8823018
TTGTACCCTTAGACCACACGTTAAAAAGTA8823001TTGTGTTGTGTTGAGTCCTTTTAACGCCACTCGCGTGTTTGAAGTCGT
3_Tms_b3v08.
OB793704.1:154330-154347
AGCCACTATTTTGCGAATAGAGCACGGGTG154330TTGTGTTGTGTTGAGTCCCTGTGCTAGTGCCTTGTTTTTCCGCCACTG
Dolomedes plantarius genome assembly, chromosome: 1.
OU015490.1:142755038-142755055
GATATATGGTTACTGATACAGAATCTTGCA142755038TTGTGTTGTGTTGAGTCCTAAGTGCGTGATTTCTGTTTATTTTTGTCT
Synanthedon vespiformis genome assembly, chromosome: 23.
OU906968.1:1815675-1815692
AAATTAAGATCTGGGAAAAGAGGTGACCGT1815675TTGTGTTGTGTTGAGTCCGCCTTTACTTAGACACTTTTAAATAATTGT
Oscheius dolichura genome assembly, chromosome: X.
OW051497.1:7841187-7841204
CTAACATTTCTATTTTTTGTATTCCTTAGA7841187TTGTGTTGTGTTGAGTCCAAAAGTGTTCAATTTCGTTACAGGTCGATC
Aricia agestis genome assembly, chromosome: 6.
OX101765.1:1853675-1853692
TAGGATGGGTAGTAACTGACTCCTCGAGTG1853675TTGTGTTGTGTTGAGTCCGAGTTGAGCTCGATGATACGACCACGAATG
Eudemis profundana genome assembly, chromosome: 10.
OX344804.1:24665321-24665338
CCTTACACTTAGACCACACGTTAAAAAGTA24665321TTGTGTTGTGTTGAGTCCTTTTAACGCCACTCGTGTGTTTGAAGTCGT
Epinotia bilunana genome assembly, chromosome: 11.
OX346263.1:8166482-8166499
TTGTACCCTTAGACCACACGTTAAAAAGTA8166482TTGTGTTGTGTTGAGTCCTTTTAACGCCACTCGTGTGTTTGAAGTCGT
Pammene aurita genome assembly, chromosome: 3.
OX352292.1:18133363-18133380
ATACTTTGTTCCCGAGTTACACTTGTTTTG18133363TTGTGTTGTGTTGAGTCCATGTTTTCTATACCTATATATTTACCTCTA
Tenthredo distinguenda genome assembly, chromosome: 3.
OX384532.1:4381877-4381894
GATACCATTGGGCACCTTGTGAAAATCTGT4381877TTGTGTTGTGTTGAGTCCACTCTTGTCTGTAATCACAGACAATCGTCT
Cydia strobilella genome assembly, chromosome: 10.
OX387685.1:9364475-9364492
GTCTATGCTTAGACCATACGTTAAAAAATA9364475TTGTGTTGTGTTGAGTCCTTTTAACGCCACTCGTGTGTTTGAAGTCGT
Apotomis capreana genome assembly, chromosome: 13.
OX392511.1:8359944-8359961
TCGGAACTTTGGACCACACGTTAAAAAGTA8359944TTGTGTTGTGTTGAGTCCTTTTAACGCCACTCGTGTGTTTGAAGTCGT
Anaspis maculata genome assembly, chromosome: 6.
OX421966.1:47559270-47559287
AAGTATAGGACTCGTGATTTGATTCTGTTG47559270TTGTGTTGTGTTGAGTCCCAATCCATTTGATAAATTTTGAAGAATTGA
Agrochola litura genome assembly, chromosome: 2.
OX424492.1:11443511-11443528
AGTTAGCAATTTCGAAGCCATGAAAACAAT11443511TTGTGTTGTGTTGAGTCCTAAACCACATAGTCAATTTTGCAGAGTTTA
Globia sparganii genome assembly, chromosome: 8.
OX438660.1:7564723-7564740
ATAGTAAGCAGAATGTGCATATGTTAGGTG7564723TTGTGTTGTGTTGAGTCCCCAGATAATTGCGCATTTCGCAGAGATCAG
Portevinia maculata genome assembly, chromosome: 1.
OX454525.1:263444672-263444689
AGGTTTCCGTAGATGTGGACAGATGTTTGT263444672TTGTGTTGTGTTGAGTCCTCGTTAAATCATAGTCGGTTGCCAACATGG
Orthosia gothica genome assembly, chromosome: 4.
OX459037.1:370801-370818
TTCTTCTCTGTTACTTTGTGATTGTTGCTG370801TTGTGTTGTGTTGAGTCCATGTCGAATAAATGTTTTCTAAAAACTAAA
Agrotis exclamationis genome assembly, chromosome: 23.
OX465439.1:9715676-9715693
TCACTGTGGCTGCTACTGGGAAATTCCCAG9715676TTGTGTTGTGTTGAGTCCTGTCTAGTCTACAGAATTAAGTGGGTCTTC
Polia nebulosa genome assembly, chromosome: 12.
OX589599.1:20966396-20966413
ACCTACTAGGAGCGCATAAATTCAAGGATA20966396TTGTGTTGTGTTGAGTCCCACACGTGCGTGCGTACAGCTGCGAGCACG
Ceraclea dissimilis genome assembly, chromosome: 12.
OY756370.1:8367396-8367413
CATCACATCACATCACATGTCATGTGTGAG8367396TTGTGTTGTGTTGAGTCCAGTACTGAGTACATCACTACACACTCCACA
Epinotia brunnichana genome assembly, chromosome: 13.
OY977948.1:10741885-10741902
TGGTATCCTTAGACCACACGTTAATAAGTA10741885TTGTGTTGTGTTGAGTCCTTTTAACGCCACTCGCTGTTTGAAGTCGTC
Coenonympha glycerion genome assembly, chromosome: 23.
OY979649.1:4623266-4623283
TAGTTAATAAATATATTATGAGAATAACAG4623266TTGTGTTGTGTTGAGTCCCGTGCGATCAATTTGACAATCGGATATGAC
Stenodema calcarata genome assembly, chromosome: 2.
OY986049.1:19619271-19619288
GCTGTTGTTGGCTAAAAAGTATCCGCGTTT19619271TTGTGTTGTGTTGAGTCCCTGTTGAAATTGAAACTTAAATTGACCATG
Stenodema calcarata genome assembly, chromosome: 6.
OY986053.1:26945213-26945230
GCTGTTGTTGGCTAAAAAGTATCCGCGTTT26945213TTGTGTTGTGTTGAGTCCCTGTTGAAATTGAAACTTAAATTGACCATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TTGTGTTGTGTTGAGTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TTGTGTTGTGTTGAGTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.349 | 0.341 | search_plus_done; http://172.18.8.135:50400/match?q=TTGTGTTGTGTTGAGTCC&k=0&no_gap=0&offset=0&limit=50
0.410 | 0.060 | search_minus_done; http://172.18.8.135:50400/match?q=GGACTCAACACAACACAA&k=0&no_gap=0&offset=0&limit=0
0.410 | 0.000 | cgi_end;

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